K03205

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K03205

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
rosette leaf (PO:0000014)
  • upturned (PATO:0002031)
    (Rosette leaf::Shape::hyponastic)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
sporophyte vegetative stage (PO:0007134)
  • decreased speed (PATO:0000304)
    (Adult plant::Growth::slow)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K03205

Determination of introduced cDNA(s)

  • J013074C01 - Rice Full-length cDNAs - Original: J013074C01

    full reading [+] show sequence

    Nucleotide sequence: J013074C01 - full reading 
    TTTATTAAAT TTTCCAACGA ATATTGATGT GCAGAAGCTA ATTGAGAAAG 
    CCAACTCCCT ACAGTCTATT GCAATTGATG CGAACACTTC ATCCTCATCT 
    TTCCTTTTAA AGAGGGATAG CTATGAGTTT GACAGAGTTC ACAGCAATCT 
    CTCTTCTTCA ACTCCTCCGA GAACTCCATT GCATCCTGTT TCTGAGAGTT 
    ACTGGGAAGA GAAGTGGAGG AATGTGCACA AGGACGGAAC AACCCCCAAG 
    GAGGTTGAGA GGGGCAATTC TTTTAGTAAA CAATTAAAGA AATCTTTGAC 
    CCAGAAGCTT GGTTTATCTA GGACAGAGTC AGATCCTTCT CCAGTGAAGG 
    TCCTCAGTGT GAGTAGTAAT GATACTCGGA ATTCAGTAAG ACGTTGCCTT 
    CTGAATACTT TATCAGATGA TTTGGATTGT TCTAATGAAC TTGCCGGGAA 
    AACTCAGGAA GACGAATTCC CTATCATCTC AGTTCACAGG GAGCATCCTC 
    TGAGCTCTGC AGAGCCTTCC AAGTTAAAGG CAGCTGGTGA AAATGTAACT 
    GTGAGCGCAT CATGTGTGGC AAAACTCAGC CCTCTAAAAA AATCTGTGGT 
    TGAGCCAGCT AATGAGAACG CAACACAGGG GACAAAGTGT GTACCAGAAG 
    CTTGTTCCAG CGGTGAGAAC TCTCCAGTGT TCTATGCAGC CAGAGCCAGT 
    GCTGGTAATG AACCTTTGAA TGGCCAGGAC ACGGATTCTG AGAGTAGCAG 
    TGTTACCTCA AATTCCTTTG CTGGTGACCA TGATAGGGAT GAAATTCTGA 
    AAGATGAGCC ATCCAGCTCT AATGATGATA ACAAAACCAT CCAAGATTCA 
    GAAGCAGCAT CTTCTGATAA AAGTCCAGAC CGAAATGGAA CCTCTGAGAG 
    GGCTGTCGTT TCTAATGAAA GAAAGCCATT CATTAGTAAA TTCCAGTGGC 
    TCTTGAAGTT GGGAAGGCCT TCGGTTGAAG GCAACATGGA GAAGAGTAGT 
    GGAGAGACAT CAGCTGATAA ACAAGACGGG GACACATCCT GTTCTCCTTC 
    TGATGGGAAT TCAAATAACT CCCGTGGTAG CGTAAAGTTG GCTTCTGGTG 
    ATAAAAAGGT CATGGGCAGC CTAAAGAATC TTGGACAAAA CATGCTTGAA 
    AATATCCAGG TGATTGAGTC GGCATTTCAG CAAGACCGTG GTCAGCCTGG 
    CCCTGTGGAG AACTTCTCAA ACAACATTCT TGGAGGCAAA GGACAGGTCA 
    CTGCAATGGC TGCTCTGACG GAGCTTCGCA AGATCAGCAA TCTGCTGAGC 
    GAGATGTAAC AGTGTAAGAT GTATCGCCCA TTCTTTCCCA GCTTTCTAGC 
    TCAGCTAAGG CCTGGTAGTA ATAAGTCAGG TACCTAGGTC TTTTTCATTC 
    AGCAGTGCTT GGCACTGCTT GAATATGTAT ATATAGATTC GATTCGATTC 
    CATTCCATTG AGTAAATCAT GTAAGCATTG TACAAGGATC ACCCGTGGAT 
    TTACCTGGCG CGTGATGAGG GAGTAGTTCT CTCCGGCATT AGGAAGCTAT 
    CTAATGATGG ATGAAATTTT GTAAGATAAA CTTTTTAAGG AAGAATAAGC 
    AGAATATGTT GC

    Gene models with high sequence identity

    1. AT4G29950.2 [+] show detail - Ypt/Rab-GAP domain of gyp1p superfamily protein
      E-value: 6e-37; Score: 152.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther MICROTUBULE-ASSOCIATED PROTEIN-RELATED 5.8e-13
    HMMPanther TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING P 5.8e-13

    See the detailed result >

    AT4G29950.2

    Model type
    Protein coding
    Short Description
    Ypt/Rab-GAP domain of gyp1p superfamily protein
    Computational Description
    Ypt/Rab-GAP domain of gyp1p superfamily protein; FUNCTIONS IN: RAB GTPase activator activity; INVOLVED IN: regulation of Rab GTPase activity; LOCATED IN: intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RabGAP/TBC (InterPro:IPR000195); BEST Arabidopsis thaliana protein match is: Ypt/Rab-GAP domain of gyp1p superfamily protein (TAIR:AT2G19240.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR