K03205

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K03205

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
rosette leaf (PO:0000014)
  • upturned (PATO:0002031)
    (Rosette leaf::Shape::hyponastic)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
sporophyte vegetative stage (PO:0007134)
  • decreased speed (PATO:0000304)
    (Adult plant::Growth::slow)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K03205

Determination of introduced cDNA(s)

  • J013074C01 - Rice Full-length cDNAs - Original: J013074C01

    full reading [+] show sequence

    Nucleotide sequence: J013074C01 - full reading
    TTTATTAAAT TTTCCAACGA ATATTGATGT GCAGAAGCTA ATTGAGAAAG 
    CCAACTCCCT ACAGTCTATT GCAATTGATG CGAACACTTC ATCCTCATCT
    TTCCTTTTAA AGAGGGATAG CTATGAGTTT GACAGAGTTC ACAGCAATCT
    CTCTTCTTCA ACTCCTCCGA GAACTCCATT GCATCCTGTT TCTGAGAGTT
    ACTGGGAAGA GAAGTGGAGG AATGTGCACA AGGACGGAAC AACCCCCAAG
    GAGGTTGAGA GGGGCAATTC TTTTAGTAAA CAATTAAAGA AATCTTTGAC
    CCAGAAGCTT GGTTTATCTA GGACAGAGTC AGATCCTTCT CCAGTGAAGG
    TCCTCAGTGT GAGTAGTAAT GATACTCGGA ATTCAGTAAG ACGTTGCCTT
    CTGAATACTT TATCAGATGA TTTGGATTGT TCTAATGAAC TTGCCGGGAA
    AACTCAGGAA GACGAATTCC CTATCATCTC AGTTCACAGG GAGCATCCTC
    TGAGCTCTGC AGAGCCTTCC AAGTTAAAGG CAGCTGGTGA AAATGTAACT
    GTGAGCGCAT CATGTGTGGC AAAACTCAGC CCTCTAAAAA AATCTGTGGT
    TGAGCCAGCT AATGAGAACG CAACACAGGG GACAAAGTGT GTACCAGAAG
    CTTGTTCCAG CGGTGAGAAC TCTCCAGTGT TCTATGCAGC CAGAGCCAGT
    GCTGGTAATG AACCTTTGAA TGGCCAGGAC ACGGATTCTG AGAGTAGCAG
    TGTTACCTCA AATTCCTTTG CTGGTGACCA TGATAGGGAT GAAATTCTGA
    AAGATGAGCC ATCCAGCTCT AATGATGATA ACAAAACCAT CCAAGATTCA
    GAAGCAGCAT CTTCTGATAA AAGTCCAGAC CGAAATGGAA CCTCTGAGAG
    GGCTGTCGTT TCTAATGAAA GAAAGCCATT CATTAGTAAA TTCCAGTGGC
    TCTTGAAGTT GGGAAGGCCT TCGGTTGAAG GCAACATGGA GAAGAGTAGT
    GGAGAGACAT CAGCTGATAA ACAAGACGGG GACACATCCT GTTCTCCTTC
    TGATGGGAAT TCAAATAACT CCCGTGGTAG CGTAAAGTTG GCTTCTGGTG
    ATAAAAAGGT CATGGGCAGC CTAAAGAATC TTGGACAAAA CATGCTTGAA
    AATATCCAGG TGATTGAGTC GGCATTTCAG CAAGACCGTG GTCAGCCTGG
    CCCTGTGGAG AACTTCTCAA ACAACATTCT TGGAGGCAAA GGACAGGTCA
    CTGCAATGGC TGCTCTGACG GAGCTTCGCA AGATCAGCAA TCTGCTGAGC
    GAGATGTAAC AGTGTAAGAT GTATCGCCCA TTCTTTCCCA GCTTTCTAGC
    TCAGCTAAGG CCTGGTAGTA ATAAGTCAGG TACCTAGGTC TTTTTCATTC
    AGCAGTGCTT GGCACTGCTT GAATATGTAT ATATAGATTC GATTCGATTC
    CATTCCATTG AGTAAATCAT GTAAGCATTG TACAAGGATC ACCCGTGGAT
    TTACCTGGCG CGTGATGAGG GAGTAGTTCT CTCCGGCATT AGGAAGCTAT
    CTAATGATGG ATGAAATTTT GTAAGATAAA CTTTTTAAGG AAGAATAAGC
    AGAATATGTT GC

    Gene models with high sequence identity

    1. AT4G29950.2 [+] show detail - Ypt/Rab-GAP domain of gyp1p superfamily protein
      E-value: 6e-37; Score: 152.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther MICROTUBULE-ASSOCIATED PROTEIN-RELATED 0.00000000000058
    HMMPanther TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING P 0.00000000000058

    See the detailed result >

    AT4G29950.2

    Model type
    Protein coding
    Short Description
    Ypt/Rab-GAP domain of gyp1p superfamily protein
    Computational Description
    Ypt/Rab-GAP domain of gyp1p superfamily protein; FUNCTIONS IN: RAB GTPase activator activity; INVOLVED IN: regulation of Rab GTPase activity; LOCATED IN: intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RabGAP/TBC (InterPro:IPR000195); BEST Arabidopsis thaliana protein match is: Ypt/Rab-GAP domain of gyp1p superfamily protein (TAIR:AT2G19240.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR