K03238

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K03238

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K03238

Determination of introduced cDNA(s)

  • J033131B11 - Rice Full-length cDNAs - Original: J033131B11

    full reading [+] show sequence

    Nucleotide sequence: J033131B11 - full reading
    GACAGCCTAC CTAGCTTCTC CTTCTCGCTC GCTTCGCCCG CATAAGTCTA 
    GCCACAAACC CGCCGCCGCC GCCGCCGCCG CCGCCGCTAG CTTCCGCGGA
    GCGGGGCGAG ATGTTCATCG AGAGCTTCCG CGTGGAGAGC CCGCACGTGC
    GGTACGGCGC GGCGGAGATC GAGTCGGACT ACCAGTACGA CACGACGGAG
    CTGGTGCACG AGAGCCACGA CGGCGCCTCC CGCTGGATCG TCCGCCCCAA
    GTCCGTCCGC TACAACTTCC GGACCACCAC CACCGTCCCC AAGCTCGGGG
    TGATGCTCGT GGGGTGGGGC GGCAACAACG GCTCAACGCT GACGGCTGGG
    GTCATCGCCA ACAGGGAGGG AATCTCATGG GCGACCAAGG ACAAGGTGCA
    GCAAGCCAAC TACTATGGCT CACTCACCCA GGCGTCCACC ATCAGGGTCG
    GGAGCTACAA CGGGGAGGAG ATCTACGCGC CCTTCAAGAG CCTCCTGCCC
    ATGGTGAACC CTGATGACCT TGTGTTCGGG GGCTGGGACA TTAGCAACAT
    GAACCTGGCT GATGCTATGA CCAGGGCAAA GGTACTTGAC ATTGATCTGC
    AGAAGCAGCT CAGACCTTAC ATGGAGTCCA TGGTGCCTCT CCCCGGCATC
    TATGACCCCG ACTTCATCGC CGCCAACCAG GGATCCCGCG CGAACAATGT
    CATCAAGGGC ACCAAGAAGG AGCAGATGGA GCAGATCATC AAGGACATCA
    GGGAGTTCAA GGAAAAGAGC AAAGTGGACA AGGTGGTGGT GTTGTGGACT
    GCAAACACTG AAAGGTACAG CAATGTCTGT GTTGGGCTCA ATGACACAAT
    GGAGAACCTC CTGGCGTCTG TGGACAAGAA CGAGGCGGAG ATATCACCAT
    CGACACTGTA TGCCATTGCC TGCGTCATGG AGGGTATACC GTTCATTAAC
    GGGAGTCCTC AGAACACCTT TGTGCCTGGG CTGATCGATC TTGCTATTAA
    GAACAACTGC CTGATTGGTG GTGATGATTT CAAGAGTGGA CAGACAAAGA
    TGAAGTCTGT CTTGGTTGAT TTCCTAGTTG GTGCTGGAAT AAAGCCCACC
    TCAATTGTCA GCTACAACCA CTTGGGGAAT AATGATGGCA TGAACCTTTC
    CGCACCTCAA ACATTCCGAT CCAAGGAGAT CTCCAAGAGC AATGTGGTCG
    ATGACATGGT CTCAAGCAAT GCCATCCTCT ATGAGCTTGG CGAGCATCCT
    GATCATGTTG TTGTGATCAA GTATGTGCCG TATGTTGGAG ACAGCAAGAG
    GGCAATGGAC GAGTACACCT CAGAGATCTT CATGGGGGGT AAGAGCACCA
    TCGTTCTGCA CAACACCTGT GAGGACTCAC TCCTTGCCGC GCCGATCATT
    CTTGATCTGG TGCTCCTTGC CGAGCTCAGC ACCAGGATTC AGCTGAAAGC
    CGAGGGGGAG GAGAAGTTCC ATTCCTTCCA TCCAGTGGCT ACCATCCTGA
    GCTACCTCAC CAAGGCACCC CTTGTTCCTC CTGGCACACC AGTGGTGAAC
    GCCCTGGCAA AGCAGAGGGC AATGCTTGAG AACATCATGA GGGCCTGCGT
    TGGGCTGGCC CCCGAGAACA ACATGATCCT GGAGTACAAG TGAGGGAGGC
    TGCCGAGGCC GAGCAGCCGT GGCATGTGGC AAAGAGGCGA ATGGGATGGA
    GCAAGAAAGA CGTGATTAGC TAGCTCTAAG AATTGTTTTA GCTTCTCTTG
    TGATTTTTCG GTCTTTCCCA TTCTTAACCT TCTGTGCTTT GTGTGAGACT
    CTTATCGGGC TATGCAACTA GCAGCAGCCT TACTATGGTA CTGGATGATG
    TTATGGAGAA TGTTAGCTAG TTCCCCTCTA TTTATAACTT ATTAGTATCG
    GAGATTTCAG TTCG

    Gene models with high sequence identity

    1. AT2G22240.1 [+] show detail - myo-inositol-1-phosphate synthase 2
      E-value: 0; Score: 911.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D NAD(P)-binding domain 9.5e-87
    HMMPfam Myo-inositol-1-phosphate synthase 9.4e-121
    HMMPfam Myo-inositol-1-phosphate synthase, GAPDH-like 3.3e-47
    HMMPIR Myo-inositol-1-phosphate synthase 6e-281
    superfamily NAD(P)-binding domain 2.7e-170
    superfamily Glyceraldehyde-3-phosphate dehydrogenase-like 1.6e-46
    HMMPanther Myo-inositol-1-phosphate synthase 0

    See the detailed result >

    AT2G22240.1

    Model type
    Protein coding
    Short Description
    myo-inositol-1-phosphate synthase 2
    Curator Summary
    ** Referred to as MIPS1 in Mitsuhashi et al 2008. Myo-inositol-1-phosphate synthase isoform 2. Expressed in leaf, root and silique. Immunolocalization experiments with an antibody recognizing MIPS1, MIPS2, and MIPS3 showed endosperm localization.
    Computational Description
    myo-inositol-1-phosphate synthase 2 (MIPS2); CONTAINS InterPro DOMAIN/s: Myo-inositol-1-phosphate synthase (InterPro:IPR002587), Myo-inositol-1-phosphate synthase, GAPDH-like (InterPro:IPR013021), NAD(P)-binding domain (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: myo-inositol-1-phosphate synthase 1 (TAIR:AT4G39800.1); Has 1859 Blast hits to 1855 proteins in 512 species: Archae - 101; Bacteria - 453; Metazoa - 126; Fungi - 158; Plants - 764; Viruses - 0; Other Eukaryotes - 257 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR