K03238

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K03238

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K03238

Determination of introduced cDNA(s)

J033131B11 - Rice Full-length cDNAs - Original: J033131B11

full reading [+] show sequence

GACAGCCTAC CTAGCTTCTC CTTCTCGCTC GCTTCGCCCG CATAAGTCTA 
GCCACAAACC CGCCGCCGCC GCCGCCGCCG CCGCCGCTAG CTTCCGCGGA 
GCGGGGCGAG ATGTTCATCG AGAGCTTCCG CGTGGAGAGC CCGCACGTGC 
GGTACGGCGC GGCGGAGATC GAGTCGGACT ACCAGTACGA CACGACGGAG 
CTGGTGCACG AGAGCCACGA CGGCGCCTCC CGCTGGATCG TCCGCCCCAA 
GTCCGTCCGC TACAACTTCC GGACCACCAC CACCGTCCCC AAGCTCGGGG 
TGATGCTCGT GGGGTGGGGC GGCAACAACG GCTCAACGCT GACGGCTGGG 
GTCATCGCCA ACAGGGAGGG AATCTCATGG GCGACCAAGG ACAAGGTGCA 
GCAAGCCAAC TACTATGGCT CACTCACCCA GGCGTCCACC ATCAGGGTCG 
GGAGCTACAA CGGGGAGGAG ATCTACGCGC CCTTCAAGAG CCTCCTGCCC 
ATGGTGAACC CTGATGACCT TGTGTTCGGG GGCTGGGACA TTAGCAACAT 
GAACCTGGCT GATGCTATGA CCAGGGCAAA GGTACTTGAC ATTGATCTGC 
AGAAGCAGCT CAGACCTTAC ATGGAGTCCA TGGTGCCTCT CCCCGGCATC 
TATGACCCCG ACTTCATCGC CGCCAACCAG GGATCCCGCG CGAACAATGT 
CATCAAGGGC ACCAAGAAGG AGCAGATGGA GCAGATCATC AAGGACATCA 
GGGAGTTCAA GGAAAAGAGC AAAGTGGACA AGGTGGTGGT GTTGTGGACT 
GCAAACACTG AAAGGTACAG CAATGTCTGT GTTGGGCTCA ATGACACAAT 
GGAGAACCTC CTGGCGTCTG TGGACAAGAA CGAGGCGGAG ATATCACCAT 
CGACACTGTA TGCCATTGCC TGCGTCATGG AGGGTATACC GTTCATTAAC 
GGGAGTCCTC AGAACACCTT TGTGCCTGGG CTGATCGATC TTGCTATTAA 
GAACAACTGC CTGATTGGTG GTGATGATTT CAAGAGTGGA CAGACAAAGA 
TGAAGTCTGT CTTGGTTGAT TTCCTAGTTG GTGCTGGAAT AAAGCCCACC 
TCAATTGTCA GCTACAACCA CTTGGGGAAT AATGATGGCA TGAACCTTTC 
CGCACCTCAA ACATTCCGAT CCAAGGAGAT CTCCAAGAGC AATGTGGTCG 
ATGACATGGT CTCAAGCAAT GCCATCCTCT ATGAGCTTGG CGAGCATCCT 
GATCATGTTG TTGTGATCAA GTATGTGCCG TATGTTGGAG ACAGCAAGAG 
GGCAATGGAC GAGTACACCT CAGAGATCTT CATGGGGGGT AAGAGCACCA 
TCGTTCTGCA CAACACCTGT GAGGACTCAC TCCTTGCCGC GCCGATCATT 
CTTGATCTGG TGCTCCTTGC CGAGCTCAGC ACCAGGATTC AGCTGAAAGC 
CGAGGGGGAG GAGAAGTTCC ATTCCTTCCA TCCAGTGGCT ACCATCCTGA 
GCTACCTCAC CAAGGCACCC CTTGTTCCTC CTGGCACACC AGTGGTGAAC 
GCCCTGGCAA AGCAGAGGGC AATGCTTGAG AACATCATGA GGGCCTGCGT 
TGGGCTGGCC CCCGAGAACA ACATGATCCT GGAGTACAAG TGAGGGAGGC 
TGCCGAGGCC GAGCAGCCGT GGCATGTGGC AAAGAGGCGA ATGGGATGGA 
GCAAGAAAGA CGTGATTAGC TAGCTCTAAG AATTGTTTTA GCTTCTCTTG 
TGATTTTTCG GTCTTTCCCA TTCTTAACCT TCTGTGCTTT GTGTGAGACT 
CTTATCGGGC TATGCAACTA GCAGCAGCCT TACTATGGTA CTGGATGATG 
TTATGGAGAA TGTTAGCTAG TTCCCCTCTA TTTATAACTT ATTAGTATCG 
GAGATTTCAG TTCG

Gene models with high sequence identity

AT2G22240.1 [+] show detail - myo-inositol-1-phosphate synthase 2
E-value: 0; Score: 911.00

InterPro Scan Digest

Program	Description	E-value
Gene3D	NAD(P)-binding domain	9.5e-87
HMMPfam	Myo-inositol-1-phosphate synthase	9.4e-121
HMMPfam	Myo-inositol-1-phosphate synthase, GAPDH-like	3.3e-47
HMMPIR	Myo-inositol-1-phosphate synthase	6e-281
superfamily	NAD(P)-binding domain	2.7e-170
superfamily	Glyceraldehyde-3-phosphate dehydrogenase-like	1.6e-46
HMMPanther	Myo-inositol-1-phosphate synthase	0

See the detailed result >

AT2G22240.1

Model type: Protein coding
Short Description: myo-inositol-1-phosphate synthase 2
Curator Summary: ** Referred to as MIPS1 in Mitsuhashi et al 2008. Myo-inositol-1-phosphate synthase isoform 2. Expressed in leaf, root and silique. Immunolocalization experiments with an antibody recognizing MIPS1, MIPS2, and MIPS3 showed endosperm localization.
Computational Description: myo-inositol-1-phosphate synthase 2 (MIPS2); CONTAINS InterPro DOMAIN/s: Myo-inositol-1-phosphate synthase (InterPro:IPR002587), Myo-inositol-1-phosphate synthase, GAPDH-like (InterPro:IPR013021), NAD(P)-binding domain (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: myo-inositol-1-phosphate synthase 1 (TAIR:AT4G39800.1); Has 1859 Blast hits to 1855 proteins in 512 species: Archae - 101; Bacteria - 453; Metazoa - 126; Fungi - 158; Plants - 764; Viruses - 0; Other Eukaryotes - 257 (source: NCBI BLink).
Link: InterPro Scan - TAIR