K03240

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K03240

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Original: K03240

Determination of introduced cDNA(s)

  • J033052F06 - Rice Full-length cDNAs - Original: J033052F06

    full reading [+] show sequence

    Nucleotide sequence: J033052F06 - full reading
    TGGAGGAAGA AAGCCAGCCC ACCACTCCAG CCATGTGGCG CCGCGCCTCC 
    CACCTCCTCC GCGCCACCGC CACCGCCACC GCCACCGCGG TCTCCCGCCG
    CGTCCCTCAC CCACATCCCG CCCCCGCAAC CGCAATCTCC ACCGTTCTGC
    CCGCCCCAAA GCTCGCCTCA TCCTTATCCT ACGCCACCCA AGCCGCGGCG
    GCGGCGGCCG TGCCGGCGGC GAGGGCCCCG AGAACGGTGG GGAGTCTGCT
    GCGGCTCAAC GACCTGAGGG ACAATCCGGG GGCGCGGAAG CAGAAGACCC
    GGAAGGGCCG AGGGATCGGC TCCGGGAAGG GCAAGACGGC TGGCCGCGGC
    CACAAGGGGC AGAAGGCGCG GGGCACCGCC AGATTCGGCT TCGAGGGCGG
    CCAGACCCCG CTCCGTCGCC GCCTCCCCCG TCGCGGCTTC AAGAACCGCT
    TCTCTCTGAC GTTTCAGCCA TGTGGTCTGG GGAAAATTGC AAAGCTCATC
    AACGCTGGAA AAATTGATTC CTCTGAATTG ATCACAATGA AGACACTGAA
    GGATACAGGT GCTATTGGAA AACAAATAAA GGATGGAATT CGACTAATGG
    GCCGTGGAGC AGAGGAAATT AAATGGCCAA TCCACCTTGA GGTATCAAGG
    ACAACTGCTA GGGCAAAAGC TGCAGTTGAA GCAGCTGGTG GAACGGTAAG
    ACTGGTGTAC TATAATAACC TTGGATTCAG GGCACTTCTC AAGCCCGAGT
    GGTTTGCAAA GAAAGGCCGA CTTTTACCTA AAGCAGCAAG GCCCCCACCC
    AAGCAACGAG ACAAGGTTGA TAGCATTGGC CGCCTGCCTG CCCCAACAAA
    GCCGCTTCCC TTCACACCAG AAGAATTGGA ATTTGCAGCA AAACGTGAAG
    CTGCTCGAGT GATTGCGTAG AAGGGAGCAT GAAGATGCTC CTCTGAACTA
    GAGTTTTGAA TTGGGCATGC ACAAGAATCA ACTGTCCTTT ATTTGAAGGA
    TCCCTTGGTA GCAAGTTCGG TATGTTTGCT TGTCATTTAG ACCAGTATGT
    CATTTTTCTT TACCCGTAGT CACATCACCA ACACGTGAGC CAGACAGCAC
    TGCTATACCT CTTGATCTAA AACTCAAAGA TGCTCGTGTC GCGGTCAACA
    ACTGCTGTGA GTCCAGCATT TGGATTATTT TAGATATATA TTTAGTTCTG
    ATATC

    Gene models with high sequence identity

    1. AT5G64670.1 [+] show detail - Ribosomal protein L18e/L15 superfamily protein
      E-value: 6e-76; Score: 281.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMTigr Ribosomal protein L15, bacterial-type 9.9e-56
    HMMPanther 60S RIBOSOMAL PROTEIN L10, MITOCHONDRIAL 1.1e-69
    HMMPanther Ribosomal protein L15, bacterial-type 1.1e-69
    superfamily Ribosomal protein L18e/L15 1.4e-31
    HMMPfam Ribosomal protein L18e/L15 2.4e-18

    See the detailed result >

    AT5G64670.1

    Model type
    Protein coding
    Short Description
    Ribosomal protein L18e/L15 superfamily protein
    Computational Description
    Ribosomal protein L18e/L15 superfamily protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: ribosome, large ribosomal subunit; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L18e/L15 (InterPro:IPR021131), Ribosomal protein L15, bacterial-type (InterPro:IPR005749); BEST Arabidopsis thaliana protein match is: ribosomal protein L15 (TAIR:AT3G25920.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR