K03246

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K03246

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K03246

Determination of introduced cDNA(s)

J023027J11 - Rice Full-length cDNAs - Original: J023027J11

full reading [+] show sequence

GGGGCAACGC CGCGGCGTGT CGTCCATCTC CATTCTCCAC GGCCACGGCC 
GAGCGGTGGT TGCTCGCCGC CCGCACTATT GCCGCGGATT TTTCTCGATT 
CTCCGCGAAC CGTTCGAAGC CACCGCCTCA CTGCTGGTCC AATCCCACCC 
GCCGCTTCTT CCTCTCCGCC CGCACGCGGA AGCTCACTTT CCCCCTCTTC 
TCCGGTACTA CTCCCCTGCG CTCCCCGCCG CCATCAACGC TCGGCTTCAA 
TACCACCGCT TCTTCTGCAT TCGCCTCCTC CTCGTGGCGA ACGCGCGCCT 
CCCACCTCGC CGTCGCCTCG TCGTACGCCG CCTTTGGTTC GGGCTCCGGC 
TCCGGCTTGT CGGGAAAGCG CGGGAGCCAC CGCGGCACGT GCTTCGGCGG 
AGGCTCCTTC CCCGCCGCCG CGAAGCTCTC CCACGCCTTG CCGCGTGGGG 
CCCCTCCCCT CCGCGGCACG GGCTTCGGGA ACGGCACCTC CCGCACCACG 
CGGACGAAGC CAGCGAGCTC CGAGAGCGCG CCGGAGCGGA GGACGGGGCG 
GGCGGGGTCG GACGCGCCGG GGAACCCGCC GAGCGCGTGG TCCTCGAGCG 
CGAGGGTGAG GTCCGCGAGG TTGGGCTCCG TGCGGCCGCG GGCCTCGGCG 
ATGGCCGAGG CCGCGCGGCC CAGGGAGGCA ACGTAGCGCC CGGCGATGTC 
GGAGAGGGCG CGGAGGGCGG CTGGCTCCGC CGCGGTGTAG CCGGACGAGT 
GGAGGATCTG GGCGGTGGAG ACTCTGCTAA CCGCGTCCTG GAGGATGCAG 
GGAAGGTGTC CGGCCGCCTC ACGGGGGGCC CTCGCCGGAG TTCCCATACA 
TGGCGGCGAC GGCGAGGATC TTCAAAAACC CTAGAGGTCA GATCGTTCCA 
ACCGGTGGTT TTATGCCATG TCCAGTTTAT GTCTTTTTTT TTTTTTTGAG 
GGAATGTCCA GTTTATGTTT TATTTATTTT TCTGCTGCAC TTTTGGTTTT 
TTTTAAATGG AAAGTATTGA TGGGTATTGG GCCGGCCATC TGCACTCGAG 
GCCCATGAGT CCACCAGTTG TCGTCTTAAC CCTTTTAATA ATGAGTAGTA 
GTTCGTCTCG TTC

Gene models with high sequence identity

AT4G34340.1 [+] show detail - TBP-associated factor 8
E-value: 8e-17; Score: 85.10

InterPro Scan Digest

Program	Description	E-value
HMMSmart	Bromodomain transcription factor	0.0000000000059
HMMPfam	Bromodomain transcription factor	0.000000000000015

See the detailed result >

AT4G34340.1

Model type: Protein coding
Short Description: TBP-associated factor 8
Computational Description: TBP-associated factor 8 (TAF8); FUNCTIONS IN: DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Histone-fold (InterPro:IPR009072), Bromodomain transcription factor (InterPro:IPR006565), Transcription factor TFIID, subunit 8, C-terminal (InterPro:IPR019473); BEST Arabidopsis thaliana protein match is: Bromodomain transcription factor (TAIR:AT5G15570.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link: InterPro Scan - TAIR