K03250

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K03250

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
cauline leaf (PO:0000013)
  • decreased size (PATO:0000587)
    (Cauline leaf::Shape::small)
rosette leaf (PO:0000014)
  • present in greater numbers in organism (PATO:0000470)
    (Rosette leaf::Number::many)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
sporophyte vegetative stage (PO:0007134)
  • decreased speed (PATO:0000304)
    (Adult plant::Growth::slow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K03250

Determination of introduced cDNA(s)

  • J033090M12 - Rice Full-length cDNAs - Original: J033090M12

    full reading [+] show sequence

    Nucleotide sequence: J033090M12 - full reading 
    GTGTCACACA GTGGAATTCG ACTATCCTCA GTCTGCCACG GCGCCAAACA 
    GGACTAGAGA TGGCGCTCAC TCATCACCTC CTCCGCGTTC TCTTAGCCAC 
    CGCATTACCG TTGCTCTTTC TCTCCCATGC AGATGCGGGC GAGTTGGGCG 
    TGTGCTACGG GAGGGACGCG GACAATCTGA TGGACCCGCA ATCCGTGGTG 
    AGCCTTCTCA GGGCGAACGG CATCACGATG GTGAGGATCT TCGACGCCGA 
    CCCGGCGGTG CTGAGGGCGC TGGCGAACAC CGGCATCAAG GTGATGGTGG 
    CGCTACCCAA CACCGATCTG GGCTCCGCCG GCTGGGATCC GAGCTACGCA 
    CAGAGGTGGG TGGAGAGCAG CGTGGTGCCC TACTACCCGG CCACGCTGAT 
    CAACGGCGTG GCCGTGGGGA ACGAGGTGTT CGATCAGGCG CCTCACCTGA 
    CCCAGCAGCT GGTGCCGGCC ATGAGGAACG TGCACGCGGC GCTGGCGAGG 
    CTGGGCCTCG CCGATGCCAT AAGGGTGTCC ACCCCGATCA CGTTCAGCTC 
    AGTCGAGGTG TCATTCCCGC CGTCCGCAGG CGCTTTCCGG GATGACATCG 
    CGCAGTCGGT GATGAGCCCC ATGATCGACT TCTTGCAGCA GACTGACTCG 
    TACTTTATGG TAAATCACTA CCCATTCTTT GCATATGCGG ATCCTTCTAC 
    CGGAATCTCC CTCGAGTACG CCACGTTCCG TCCCAATGCT GGTGTGTTCG 
    ATCCGGTGAG CGGCGTCACA TATTACAGTC TCTTTGATGC CGAGCTAGAT 
    GCAGTTTACT ATGCAATAAA CAAGGTTTCT GGTAGTAACG AGAGGGCCTC 
    GTTAGCCCAA GCAGGAGGAC GGGTGCCCAT CAGAGTTTCA GAATCAGGCC 
    ACCCCTCTGG TGGTAGAATC CGCTCAGGGG TCACAGAAGC CAATGCTGAT 
    GGGGACTCGG TGGCAACTAA AGCTAACGCT CAAGTATACA ACAATGGCCT 
    TGCCAAGCGA GTCTTGTTCG GGGCCTCCAA TATGGAGGAT GTTTCTGCGT 
    ACATATTCGC TTTGTTCAAC GAGAACAAGA AGGGTGGGCC ATCTATAGAG 
    AGCAACTTCG GCCTGTTCTA TCCGGATGGG ACGAAGGTGT ACGATGTTGA 
    CTTTCATGGT GGTGGTACAT GTCCCACAAA GGAGAGCTGG TGTGTGGCAA 
    ATGCAGCTAT TGGGAATGCA CGGCTACAGG GAGCACTGGA CTGGGCGTGT 
    AGTAACGGCG CGGACTGCAG TGCTATCCAA CAGGGAAAAG TGTGCTATGA 
    GCCAAACACC ATGGTTGCAC ATGCATCTTA TGCATTCAAT GACTACTACC 
    AGCGTAATGG CAAGGCAAGT AGCGCGTGCA ACTTTGCCGG TGCTGCTTAC 
    ATCGTCTACA AGCCATCACC AAGCATCTGT GACCCGAACC CGAGTTGGTG 
    CGTGGCGAAC GCAGAGGTCG GGGACATGCG GTTACAGGCA GCACTAGACT 
    ATGCATGCAG TAGCTGCGCA GACTGCAGTG CCATCCAGCC TGGTGGACGG 
    TGCTTTGATC GTAACACCAA GGTGGCGCAT GCGACCTATG CATTCAATGA 
    CTATTACCAG ACTGCCGGCA GGGCAAGTGG CTCGTGTGAC TTTGGTGGTG 
    CTGCTTCCAT CGTCAACCAG GCACCGAGAA TTGGAAACTG CGTACTCCCA 
    CCAAGCAAGA CTTCTTCAAT GAACATATTT TACTGAAGAC CGAAGGTAGC 
    TTACCAGAAG CTCAATAATG AAAGTGGGAT TGAAGAATAG CCCCGTATTA 
    CTGTGCTGAG AAAATAAGGA TGATATTGTA TTTAGATTCT GGTTAAGAAT 
    TTTAAGTGTA TTCCGTTCGC TCTTGTTGAA TAAAATTCCT TTCTACACAA 
    TGCAGAATAA AATGTACAAT AAACTCCATC AAACTCCTAG AGTGCAATGG 
    AAAATTTGGG AATGCAAATA CACTTAGCTG CC

    Gene models with high sequence identity

    1. AT5G55180.2 [+] show detail - O-Glycosyl hydrolases family 17 protein
      E-value: 4e-106; Score: 382.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMSmart X8 3.3e-43
    HMMSmart X8 3.4e-41
    Gene3D Glycoside hydrolase, subgroup, catalytic core 6.5e-101
    superfamily Glycoside hydrolase, catalytic core 2.3e-93
    HMMPfam Glycoside hydrolase, family 17 8.6e-83
    HMMPfam X8 1.9e-27
    HMMPfam X8 2.3e-27

    See the detailed result >

    AT5G55180.2

    Model type
    Protein coding
    Short Description
    O-Glycosyl hydrolases family 17 protein
    Computational Description
    O-Glycosyl hydrolases family 17 protein; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: X8 (InterPro:IPR012946), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 17 (InterPro:IPR000490), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: O-Glycosyl hydrolases family 17 protein (TAIR:AT4G26830.1); Has 563 Blast hits to 555 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 554; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR