K03251

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T1
	whole plant (PO:0000003)	decreased height (PATO:0000569) (Adult plant::Plant height::short)
	rosette leaf (PO:0000014)	epinastic (PATO:0000945) (Rosette leaf::Shape::epinastic)
	sporophyte vegetative stage (PO:0007134)	decreased speed (PATO:0000304) (Adult plant::Growth::slow)
	fruit (PO:0009001)	abnormal (PATO:0000460) (Silique::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K03251

Determination of introduced cDNA(s)

J033034N17 - Rice Full-length cDNAs - Original: J033034N17

full reading [+] show sequence

GACACTACTA GTCCTCTTCA CCCCGCCGCT TCCACCAGAT GGGCCGCAAG 
AGGAGGGCTA GGGTTTCCCG CGACGGCGAC GGCGAGGAGG AGGAGGAGCC 
CGCGCCGGTC GCCGCAGAGA GCGAGAGCCT CTACGAGATC TTAGGGGTTG 
AGAGGACAGC TTCACAGCAG GAAATAAAGA AGGCTTATCA CAAGTTGGCC 
TTACGTCTTC ATCCAGACAA GAATCCTGGA GATGAGGAAG CCAAGGAGAA 
ATTTCAGCAG CTTCAGAAGG TGATATCTAT TCTTGGGGAT GAGGAGAAAA 
GGGCATTATA TGATGAGACT GGAATTGCTG ATGATGATGC ACTGGTAGGA 
GAAGCTGCAG ACAATCTTCA AGAGTACTTC AGAGCTGTTT ACAAAAAGGT 
TACTGAGGCT GATATTGAAG AATTTGAAGC TAAGTACAGA GGGTCAGATT 
CTGAAAAAAA GGACTTGAAG GATCTATATA CAAAATTTAA AGGCAACATG 
AACAGGCTTT TTTGTTCAAT GATTTGCTCA GATCCAAAGC TTGATTCCCA 
TCGCTTTAAA GATATAATTG ATGAGGCAAT TGCTGAAGGT GAGCTGAAGT 
CAACAAAAGC ATATGATAAA TGGGCCAAGA AGATCTCCGA GATTGAACCT 
CCCACAAACC CATTAGAGAG AAGAGTGAAG AAGAACAAGA AGAAGAGCGA 
GGAGAACGAT CTGATCCTCG CGATCTCACA GCGCAGGGCG CAGCGGAAGG 
ACCGGTTCGA CTCGGTGCTC TCATCCATCA TGTCCAAATG TGACCCAAAG 
GGGAGCAGCA GCTCGGAGCC CACGGAAGAG GAGTTTGAGC AAGCTCGTCA 
GAGGCTCGAG AAAAAGCGTT CCAAGAACCG CAAATGATTC GCCTTGCAGC 
CTCCCTTGTG GCTTGTGCAA TTCTGTTTCA TCGAGTTTGT TAACCAGGCC 
TATCTTTGAC AGATCAGATT GTCTGATATT CTGATCCCTA GTATCTATGT 
GAGATTGGCT GCTTCTGTTG TGGTGCAAGT TCAGGCTGGA ATCTGAACTT 
CCTGCTCTTT TGCTGAAACT GGGGCCGATC TTTAGCATCA CTGCATATGT 
GTATAATCAA AATCTTAAAT GTTTCCTGGA TGTGAACTTG TGATCTAGTT 
TCTGTATAAG TTAATCCAGT AGCTGTCTTG AGTTTTTACG CCTGTAAACG 
ATATAAACAA GAATGCATCA TCAACAGGGA CGAGAGGCGG GTTTGCAATC 
TCGTTTTGGG GTTG

Gene models with high sequence identity

AT5G06910.1 [+] show detail - J-domain protein 6
E-value: 2e-87; Score: 319.00

InterPro Scan Digest

Program	Description	E-value
superfamily	Heat shock protein DnaJ, N-terminal	3.4e-26
HMMSmart	Heat shock protein DnaJ, N-terminal	8.5e-28
HMMPfam	Heat shock protein DnaJ, N-terminal	1.2e-26
Gene3D	Heat shock protein DnaJ, N-terminal	6.3e-23
HMMPanther	DNAJ HOMOLOG SUBFAMILY C MEMBER 9	2.7e-43
HMMPanther	Molecular chaperone, heat shock protein, Hsp40, DnaJ	2.7e-43
ProfileScan	Heat shock protein DnaJ, N-terminal	21.833
FPrintScan	Heat shock protein DnaJ	7.5e-11
FPrintScan	Heat shock protein DnaJ	7.5e-11
Coil	coiled-coil	0

See the detailed result >

AT5G06910.1

Model type: Protein coding
Short Description: J-domain protein 6
Curator Summary: DnaJ homologue, contains J domain which is common in all known DnaJ proteins but missing G/F domain.
Computational Description: J-domain protein 6 (ATJ6); FUNCTIONS IN: unfolded protein binding, heat shock protein binding; INVOLVED IN: protein folding; LOCATED IN: nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Heat shock protein DnaJ (InterPro:IPR003095); BEST Arabidopsis thaliana protein match is: Chaperone DnaJ-domain superfamily protein (TAIR:AT3G12170.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link: InterPro Scan - TAIR