K03308

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K03308

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K03308

Determination of introduced cDNA(s)

  • J023096A15 - Rice Full-length cDNAs - Original: J023096A15

    full reading [+] show sequence

    Nucleotide sequence: J023096A15 - full reading 
    GTGATCAACA AAAACACAAA AAAGGGGAAG GCAGGCAGGG CAGGCGAGGC 
    GATCGAAGGA AGAGGTTTCA TCATTTCACT CCATTTCCCC TGTTTCTTCT 
    TCTTCTTCTG TTCGTCTCTC GAGGGCTCTT CTTCTTCTTC AATATACTAC 
    TAGTTGGCCT TCCTCCCTAA CAAGCAAGGA AGGAAGGAAG GGAGAAAGGC 
    GATCGATCCT CTACTCTAGC CAGGATACTC GTATAGGAGT AGTTAGGAGG 
    AGGATAGAAG TTAGGGTTTG CGGTCGGGCA GATCCAGGCG GCCGTGGCCA 
    TAAGGGAATC CGTCTGCCTT GGTCGGTGGA TGGGTGGGTG ATGAAGGCAG 
    CGCCCACGGC GTCTCAGCAC CTCAAGCGTC CTAACCTCGC CCGATCCGAT 
    CCGTCGCCCA TGCCGGCGCC CGCGCCCGCG CCCGCCCCCT CGCAGCAGGG 
    GCAGGGGCCC TCCCAGAACC AGAAGCTCAC CACCAATGAC GCGCTTCTCT 
    ACCTCAAGGC CGTCAAGGAT AAGTTCCAGG ACAAGCGCGA CAAGTACGAT 
    GAGTTCCTCG AGGTCATGCG CGATTTCAAG AGCGGCAGGA TCGACACCGC 
    TGGCGTCATC ATCCGTGTCA AGACCCTCTT CAATGGCCAC CACGAGCTCA 
    TCCTTGGCTT CAACGCCTTC TTGCCCAAGG GATTTGCCAT CAAGCTCCAG 
    GACCTGGAGA AGAAGCCTGT TGACTTCATG GAGGCCATCA ATTTCGTCAA 
    CAAGATCAAG GCTCGCTTCC AGCAGGAGGA CCACGTCTAC AAGTCCTTCT 
    TAGGCATCCT CAACATGTAC CGCTTGCATA ACAAGTCCAT CCAAGATGTT 
    TACGGGGAGG TTGCAGCGCT CTTCCGTGAC TATCCCGATT TACTCGAGGA 
    GTTCAAGCAT TTCTTGCCTG ATACGTCAAC CGCTCCAGAA CCGGTAACTG 
    TTCCTAGAGG TGTTTCAAGC AGACACGACG ACAGGGGCCC ACTAATGCCC 
    TCGGCAAGGA ACGCGCAGAT CATTAAGAGG GAGAGGGCTT ATCCATCAAC 
    TGTCGATCGT GACTTCAGTA TTGATCGCCC TGATCCTGAG GATGATCCCC 
    ACAGAAGGCG TGTTGACAAG GGAAGGGATG GTAAGGTTGA TCGCAGTAGA 
    AAAGATTATG AAACGGACGT GAAAGACGTT GAATATGACA GCAAAGATTT 
    GGATGGAGGA CAACGTAAGC GCAAACTAGC AAGGAAGATG GATGGTGCTC 
    TTGCTGACAC ACAACAAGGT GGGGTTAGCA CCTCTACTTC ACCATACGAC 
    GATAAGGATG CATTGAAGAG TGCATACACA AAGGAGTTCC GTTTTTGTGA 
    GAAAGTAAAG GAGAAGCTAG AGCCTGAAGC TTACCAGGAG TTTTTGAAAT 
    GCCTTCACAT ATACAGCCAG GAAATAATTA CAAGGAGTGA ATTG

    Gene models with high sequence identity

    1. AT1G70060.1 [+] show detail - SIN3-like 4
      E-value: 6e-76; Score: 281.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Paired amphipathic helix 4.3e-15
    HMMPfam Paired amphipathic helix 4e-19
    HMMPfam Paired amphipathic helix 4.9e-08
    superfamily Paired amphipathic helix 5.7e-24
    superfamily Paired amphipathic helix 3.3e-23
    superfamily Paired amphipathic helix 4.8e-07
    HMMPanther SIN3B-RELATED 5.2e-90
    Gene3D Paired amphipathic helix 1.6e-23
    Gene3D Paired amphipathic helix 2.7e-23

    See the detailed result >

    AT1G70060.1

    Model type
    Protein coding
    Short Description
    SIN3-like 4
    Curator Summary
    Encodes a homolog of the transcriptional repressor SIN3 (AT1G24190).
    Computational Description
    SIN3-like 4 (SNL4); INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Histone deacetylase interacting (InterPro:IPR013194), Paired amphipathic helix (InterPro:IPR003822); BEST Arabidopsis thaliana protein match is: SIN3-like 3 (TAIR:AT1G24190.2); Has 2571 Blast hits to 1108 proteins in 232 species: Archae - 4; Bacteria - 56; Metazoa - 1028; Fungi - 808; Plants - 415; Viruses - 14; Other Eukaryotes - 246 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR