K03401

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K03401

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K03401

Determination of introduced cDNA(s)

  • J023108B13 - Rice Full-length cDNAs - Original: J023108B13

    full reading [+] show sequence

    Nucleotide sequence: J023108B13 - full reading 
    GTGTTCGCCG ACGAGCCGAC CGTTGCGTCC GCGTGTTGCG ACTCCGCCGA 
    GCCCTAGTTT CCGCCGCCGC CGCCGCCGCG CCCTCGCCGC CACCCCCACC 
    GATCTCGATC CCCCCACCCC GCGGGCAAAT CGCCGCCGAA TCCGGCCTCG 
    GATCCGCGGA ATCCGGGCCG GGTCAGCCAT GATCTTGGAG CAGTTCGACG 
    AGTCGGCGGC GGAGAAAGCG GATGCGGCGA TGGTGGTGGC GCCGCCGTCC 
    AACTTCGGGA TGGTGGACAC GGGGGTGTAC CGGTCGGGGT TCCCGGACCC 
    TGCCAGCTTC GGTTTCCTCA GGGGCCTCGG CCTCCGATCT GTCGTGTATC 
    TGTGCCCTGA ACCTTACATG GAGACGAATG CCGAGTTCTT GAAGGCGGAG 
    GGGATCCGCC TCTTCCAATT TGGGATTGAG GGGAACAAGA TGTAAGGAAT 
    CACCCAGTTC TAATCCATTG CAAAAGAGGA AAGCACCGTA CTGGATGTCT 
    TGTGGGCTGC TTCAGAAAGC TGCAGAATTG GTGTCTCTCA TCAGTCTTTG 
    AAGAGTACCA TCGGTATGCT GCTGGAAAGT CACGGTTGTC AGATCTGAAG 
    TTTATCGAAT CATTTGATGT CAACTGCATG ACGGATTGCC TGCTCAGGCT 
    CATCTACCAC TACCATGGTT GCCTTCAGAA AAGCAAGCGC CTGGCATACA 
    GCGAGAGATA AACTACTGTG GAAACTATCT CCTGTGTCAT GAGTATATCC 
    CTGGAGAAGA ATTGGTCGGA CTATTTTTCC TTTTTGGAGG GGAATTGGTC 
    GGAGTTGTAA CACAAAGACT CGAGTTACCG GGCATCTGTT GATTCTTTTT 
    TTATATCTTC ATGCCTTGGT TCTTTTTATA ATATATATAT ATATTCTTTG 
    AGC

    Gene models with high sequence identity

    1. AT1G05000.1 [+] show detail - Phosphotyrosine protein phosphatases superfamily protein
      E-value: 1e-50; Score: 108.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D G3DSA:3.90.190.10 3.49999466863949e-22
    PatternScan Protein-tyrosine phosphatase, active site 0
    superfamily SSF52799 5.50000546509999e-10
    HMMPfam Protein-tyrosine phosphatase, SIW14-like 1.1e-23
    FPrintScan Protein-tyrosine phosphatase, dual specificity phosphatase, eukaryotic 6.7e-20
    FPrintScan Protein-tyrosine phosphatase, dual specificity phosphatase, eukaryotic 6.7e-20
    FPrintScan Protein-tyrosine phosphatase, dual specificity phosphatase, eukaryotic 6.7e-20
    Gene3D no description 2.9e-17
    HMMPfam Protein-tyrosine phosphatase, SIW14-like 4.9e-17

    See the detailed result >

    AT1G05000.1

    Model type
    Protein coding
    Short Description
    Phosphotyrosine protein phosphatases superfamily protein
    Computational Description
    Phosphotyrosine protein phosphatases superfamily protein; FUNCTIONS IN: phosphatase activity, protein tyrosine phosphatase activity, phosphoprotein phosphatase activity; INVOLVED IN: dephosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Protein-tyrosine phosphatase, active site (InterPro:IPR016130), Protein-tyrosine phosphatase, dual specificity phosphatase, eukaryotic (InterPro:IPR020428), Protein-tyrosine phosphatase, SIW14-like (InterPro:IPR004861); BEST Arabidopsis thaliana protein match is: Phosphotyrosine protein phosphatases superfamily protein (TAIR:AT2G32960.1); Has 669 Blast hits to 655 proteins in 149 species: Archae - 0; Bacteria - 50; Metazoa - 4; Fungi - 355; Plants - 145; Viruses - 0; Other Eukaryotes - 115 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR