K03425

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K03425

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K03425

Determination of introduced cDNA(s)

J023118K01 - Rice Full-length cDNAs - Original: J023118K01

full reading [+] show sequence

AATGGATCCT AGCCACTACA AGGGCAACCA TACATATGTT CCAGTCTCTC 
AGAAGGGATA TTGGCAGTTT GAGATGGGCG ATGTCCTGAT TGGGGGAAAG 
ACCACAGGAT TTTGTGCTAG CGGTTGTTCA GCTATAGCAG ACTCTGGAAC 
ATCATTGCTT GCTGGCCCCA CAGCCATAAT CACTGAAATC AATGAGAAGA 
TCGGTGCTAC TGGGGTAGTC AGCCAAGAAT GCAAGACAGT TGTTTCTCAA 
TATGGACAAC AGATCCTAGA TCTGTTGCTT GCTGAGACAC AGCCATCAAA 
AATCTGCTCT CAGGTTGGTC TGTGTACTTT TGATGGGAAG CATGGTGTTA 
GTGCTGGAAT TAAGAGCGTA GTAGATGATG AAGCTGGGGA ATCGAATGGT 
CTCCAAAGTG GTCCCATGTG CAATGCCTGT GAGATGGCTG TTGTATGGAT 
GCAGAACCAA CTTGCACAGA ACAAGACTCA GGATCTCATC TTGAACTACA 
TTAATCAGCT CTGTGACAAG CTCCCAAGTC CAATGGGAGA ATCATCTGTG 
GACTGTGGCA GCCTTGCATC CATGCCTGAG ATTTCATTCA CCATTGGAGG 
CAAAAAGTTT GCACTGAAGC CAGAAGAGTA TATTCTGAAG GTTGGTGAAG 
GAGCTGCTGC CCAGTGCATC AGTGGATTCA CAGCCATGGA CATCCCTCCT 
CCCCGTGGTC CTCTCTGGAT CCTGGGTGAC GTTTTCATGG GTGCCTACCA 
TACCGTGTTC GACTACGGCA AGGTGAGGGT TAGCTTCGCG AAGTCGGCCT 
AAACGTGTTG TTGTCACGTT CCTAATGACG AGGTGGACGC ATACGCCGAG 
AGAAGAAGAC CGTAGCTTTT AACTAGCGTA TTTATCCGGC GATGTGTGTA 
TATATGCATG CTACATAACA TGTTTATGTT TTCCAAGGCC TGAGATGGCG 
CCCGTCTATT TTAGCTTGGC AAGAATATCT CGGACCAGTC TCTGTTCGAA 
TTCTCGTACT GATATGTGAA CTTCTGATAA CATGTGCACT GTGTTTTGTG 
ACTGAATTGC TAGTCAGTCC GAAGGTTAAT TATCCC

Gene models with high sequence identity

AT1G11910.1 [+] show detail - aspartic proteinase A1
E-value: 1e-114; Score: 409.00

InterPro Scan Digest

Program	Description	E-value
superfamily	Peptidase aspartic	8.9e-45
superfamily	Saposin-like	4.3e-29
PatternScan	Peptidase aspartic, active site	0
Gene3D	Peptidase aspartic, catalytic	6.4e-54
HMMPfam	Peptidase A1	2.3e-52
HMMPfam	Saposin-like type B, 1	1.6e-15
HMMPfam	Saposin-like type B, 2	1.6e-14
HMMSmart	Saposin B	0.0063
ProfileScan	Saposin B	13.464
ProfileScan	Saposin B	12.419
FPrintScan	Saposin	3.3e-08
FPrintScan	Saposin	3.3e-08
HMMPanther	ASPARTIC PROTEINASE-RELATED	4.8e-109
HMMPanther	Peptidase A1	4.8e-109

See the detailed result >

AT1G11910.1

Model type: Protein coding
Short Description: aspartic proteinase A1
Curator Summary: Encodes an aspartic proteinase that forms a heterodimer and is stable over a broad pH range (ph 3-8).
Computational Description: aspartic proteinase A1 (APA1); FUNCTIONS IN: endopeptidase activity; INVOLVED IN: proteolysis, response to salt stress; LOCATED IN: vacuole; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Saposin-like (InterPro:IPR011001), Peptidase aspartic (InterPro:IPR021109), Peptidase aspartic, catalytic (InterPro:IPR009007), Saposin-like type B, 1 (InterPro:IPR007856), Saposin-like type B, 2 (InterPro:IPR008138), Saposin B (InterPro:IPR008139), Peptidase A1 (InterPro:IPR001461), Peptidase aspartic, active site (InterPro:IPR001969); BEST Arabidopsis thaliana protein match is: Saposin-like aspartyl protease family protein (TAIR:AT1G62290.2); Has 7443 Blast hits to 5200 proteins in 420 species: Archae - 0; Bacteria - 2; Metazoa - 4134; Fungi - 1703; Plants - 675; Viruses - 0; Other Eukaryotes - 929 (source: NCBI BLink).
Link: InterPro Scan - TAIR