K03514

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K03514

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
cauline leaf (PO:0000013)
  • abnormal (PATO:0000460)
    (Cauline leaf::Others)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
stem (PO:0009047)
  • decreased thickness (PATO:0000592)
    (Stem::Shape::thin)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K03514

Determination of introduced cDNA(s)

  • J033032F08 - Rice Full-length cDNAs - Original: J033032F08

    full reading [+] show sequence

    Nucleotide sequence: J033032F08 - full reading 
    GCTGCTCAAG AAAAGCTCGG ATTCTTGGCG GTTTCCCCCA CCATTTCCCC 
    CTCCTCGATC TGGGCCTCCT CCCCGCAAGC GTGCGCCTCG CATTCCCACC 
    GAGCGTGCCT ACGTGCTGCG CTTTGCTGTG CTGCGGGAGG ATGGAGGGTG 
    GGGGGAGAGG CGGCGGCCCC GTGGTGGCGG CGCTGCTGCT GGCCGCGCTC 
    CTCCTCGCCG CCGTCGCTCC GGCCTCCGCG TCGTCGTACC CCGCAAAGGT 
    GGTGAGTGGG TTCCTCTCCA ACGCGGCGTC GTCGGTGATG AAGCGGCTGT 
    GGTCGCTCAA ATCCACCACG AAGACAGGAA GCGGAGGGAA GTCGATGGTG 
    AAGTACGAGG GCGGGTACAC CGTGGAGACG GTCTTCGACG GGAGCAAGCT 
    GGGGATCGAG CCCTACGCGG TGGAGGTCAC CCAGGGCGGC GAGCTGCTCG 
    TCATGGACTC CATGAACAGC AACATCTACA GGATCGCCCT GCCGCTGTCT 
    CGATATAGCA GACCAAAGCT TGTAGCTGGT TCTCCGGAAG GATTTCCTGG 
    TCATGTTGAT GGAAGGCCTC GAGAGGCCAG GATGAACCAT CCAAAGGGAT 
    TTACGGTGGA CGGCAGGGGT AACATTTATG TGGCTGATGC TATGAACATG 
    GCTATTAGAA AGATCAGTGA CACAGGGGTT ACAACTATTG CTGGGGGGAA 
    ATCAAGCAGA GGAGGGCATG TTGATGGACC AAGTGATGAT GCAAAATTTT 
    CTACTGATTT TGAAGTCCGC TATATTGGCA GTAGCTGCTC CCTTTTGGTG 
    ATTGACAGAG GAAACCAAGC GATTCGGGAG ATTCAACTCA ACTTCGATGA 
    CTGTGTATAT CAGTATGAAG CTGGTTTTCC TCTAGGAGTT GCGGTGCTTC 
    TTGCTGCTGC GTTCTTTGGC TACATGCTCG CGTTGCTCCA ACGCAGGGTA 
    TTAGGGATGG TGTCAACAGA AGATGAACCT GAGACTCAGA CTCCACTAAA 
    AGCTAGCATT GCAAGCATCC CTCCATACCA GAAGCCGCTA AAACAATCTG 
    TCCGTCCACC GTTAATCCCA AATGAGGATG AATCTGAGAA ACAAGAGGTT 
    GAAGAGGGGT TCTTTACCTC AATCGGTAAA CTCATCGTGG GAGCCAAATC 
    GTCTGTTGCA GAGATAGTTG GTGCAGCCTT TTCTAGAAAG AAGCGTTTAA 
    ACATTCATCA GCAGCAGGCT AGAGTACGCT CTTGGCCGGT TCAAGAAAGC 
    TACGCCATCC CGCGGGATGA GACGCCTCCA CCACTGGATA CAAGAACTCC 
    AACCCCACGC AAGAACTATG CTTTCATGTC AAAGGAGCCC GAAAAGATCC 
    ACCACATCCG GCATGGTCGG TCTCAGTTCA ATGGTTGGAA CGGAGACGCA 
    CCTCAGCAGC AGCAGCAACA GCAGCAGCAG CAGCAAATAC ATCACCAGCA 
    GTACTTACAG CATCATAGGC AGTATTCATC AGGACCGCAA ACTTTCTATG 
    AGCCAAGCTG TGAGGCAACA AACGAGATTG TCTTTGGAGC CGTGCAGGAG 
    GTAGACAGCA AGCGCCGCGC TGTGGAGATC AAACCCATGA ACCATGGCGA 
    TCCGCAGTAT GACCAAGATG GGTTGCGGCA CCGCAGCAGC TACACCGGTT 
    ACAGCAACAA CTGGTAGATG GCCAGATGTC CTTTTTTGCA GCTACATGAT 
    TAGATTTACT GCTCGTTAAG TTATTTTGCC GTCGTCGAAT TTGTACTGCC 
    TGAAACAGAT AAATAGAAAT TCAGGAAGTA CCGGTGATAT GGGCAAAGTC 
    GAAAGCTGGT TTTTGCTGGA TGAACGTCGT GATCTTAGAC CTCTACTGAT 
    ATATATATCT ATGTAAATGG AATGTGTTTT TCGCGTCCG

    Gene models with high sequence identity

    1. AT1G70280.2 [+] show detail - NHL domain-containing protein
      E-value: 2e-114; Score: 410.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D Six-bladed beta-propeller, TolB-like 0.0000061
    HMMPanther RING ZINC FINGER, C3HC4 TYPE 0.0003
    HMMPanther RING FINGER-CONTAINING PROTEIN-RELATED 0.0003
    superfamily NHL repeat 0.0000006

    See the detailed result >

    AT1G70280.2

    Model type
    Protein coding
    Short Description
    NHL domain-containing protein
    Computational Description
    NHL domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NHL repeat (InterPro:IPR001258), Six-bladed beta-propeller, TolB-like (InterPro:IPR011042); BEST Arabidopsis thaliana protein match is: NHL domain-containing protein (TAIR:AT1G23880.1); Has 7202 Blast hits to 4120 proteins in 426 species: Archae - 63; Bacteria - 1459; Metazoa - 1476; Fungi - 468; Plants - 264; Viruses - 2; Other Eukaryotes - 3470 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR