K03514

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K03514

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
cauline leaf (PO:0000013)
  • abnormal (PATO:0000460)
    (Cauline leaf::Others)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
stem (PO:0009047)
  • decreased thickness (PATO:0000592)
    (Stem::Shape::thin)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K03514

Determination of introduced cDNA(s)

  • J033032F08 - Rice Full-length cDNAs - Original: J033032F08

    full reading [+] show sequence

    Nucleotide sequence: J033032F08 - full reading
    GCTGCTCAAG AAAAGCTCGG ATTCTTGGCG GTTTCCCCCA CCATTTCCCC 
    CTCCTCGATC TGGGCCTCCT CCCCGCAAGC GTGCGCCTCG CATTCCCACC
    GAGCGTGCCT ACGTGCTGCG CTTTGCTGTG CTGCGGGAGG ATGGAGGGTG
    GGGGGAGAGG CGGCGGCCCC GTGGTGGCGG CGCTGCTGCT GGCCGCGCTC
    CTCCTCGCCG CCGTCGCTCC GGCCTCCGCG TCGTCGTACC CCGCAAAGGT
    GGTGAGTGGG TTCCTCTCCA ACGCGGCGTC GTCGGTGATG AAGCGGCTGT
    GGTCGCTCAA ATCCACCACG AAGACAGGAA GCGGAGGGAA GTCGATGGTG
    AAGTACGAGG GCGGGTACAC CGTGGAGACG GTCTTCGACG GGAGCAAGCT
    GGGGATCGAG CCCTACGCGG TGGAGGTCAC CCAGGGCGGC GAGCTGCTCG
    TCATGGACTC CATGAACAGC AACATCTACA GGATCGCCCT GCCGCTGTCT
    CGATATAGCA GACCAAAGCT TGTAGCTGGT TCTCCGGAAG GATTTCCTGG
    TCATGTTGAT GGAAGGCCTC GAGAGGCCAG GATGAACCAT CCAAAGGGAT
    TTACGGTGGA CGGCAGGGGT AACATTTATG TGGCTGATGC TATGAACATG
    GCTATTAGAA AGATCAGTGA CACAGGGGTT ACAACTATTG CTGGGGGGAA
    ATCAAGCAGA GGAGGGCATG TTGATGGACC AAGTGATGAT GCAAAATTTT
    CTACTGATTT TGAAGTCCGC TATATTGGCA GTAGCTGCTC CCTTTTGGTG
    ATTGACAGAG GAAACCAAGC GATTCGGGAG ATTCAACTCA ACTTCGATGA
    CTGTGTATAT CAGTATGAAG CTGGTTTTCC TCTAGGAGTT GCGGTGCTTC
    TTGCTGCTGC GTTCTTTGGC TACATGCTCG CGTTGCTCCA ACGCAGGGTA
    TTAGGGATGG TGTCAACAGA AGATGAACCT GAGACTCAGA CTCCACTAAA
    AGCTAGCATT GCAAGCATCC CTCCATACCA GAAGCCGCTA AAACAATCTG
    TCCGTCCACC GTTAATCCCA AATGAGGATG AATCTGAGAA ACAAGAGGTT
    GAAGAGGGGT TCTTTACCTC AATCGGTAAA CTCATCGTGG GAGCCAAATC
    GTCTGTTGCA GAGATAGTTG GTGCAGCCTT TTCTAGAAAG AAGCGTTTAA
    ACATTCATCA GCAGCAGGCT AGAGTACGCT CTTGGCCGGT TCAAGAAAGC
    TACGCCATCC CGCGGGATGA GACGCCTCCA CCACTGGATA CAAGAACTCC
    AACCCCACGC AAGAACTATG CTTTCATGTC AAAGGAGCCC GAAAAGATCC
    ACCACATCCG GCATGGTCGG TCTCAGTTCA ATGGTTGGAA CGGAGACGCA
    CCTCAGCAGC AGCAGCAACA GCAGCAGCAG CAGCAAATAC ATCACCAGCA
    GTACTTACAG CATCATAGGC AGTATTCATC AGGACCGCAA ACTTTCTATG
    AGCCAAGCTG TGAGGCAACA AACGAGATTG TCTTTGGAGC CGTGCAGGAG
    GTAGACAGCA AGCGCCGCGC TGTGGAGATC AAACCCATGA ACCATGGCGA
    TCCGCAGTAT GACCAAGATG GGTTGCGGCA CCGCAGCAGC TACACCGGTT
    ACAGCAACAA CTGGTAGATG GCCAGATGTC CTTTTTTGCA GCTACATGAT
    TAGATTTACT GCTCGTTAAG TTATTTTGCC GTCGTCGAAT TTGTACTGCC
    TGAAACAGAT AAATAGAAAT TCAGGAAGTA CCGGTGATAT GGGCAAAGTC
    GAAAGCTGGT TTTTGCTGGA TGAACGTCGT GATCTTAGAC CTCTACTGAT
    ATATATATCT ATGTAAATGG AATGTGTTTT TCGCGTCCG

    Gene models with high sequence identity

    1. AT1G70280.2 [+] show detail - NHL domain-containing protein
      E-value: 2e-114; Score: 410.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D Six-bladed beta-propeller, TolB-like 6.1e-06
    HMMPanther RING ZINC FINGER, C3HC4 TYPE 0.0003
    HMMPanther RING FINGER-CONTAINING PROTEIN-RELATED 0.0003
    superfamily NHL repeat 6e-07

    See the detailed result >

    AT1G70280.2

    Model type
    Protein coding
    Short Description
    NHL domain-containing protein
    Computational Description
    NHL domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NHL repeat (InterPro:IPR001258), Six-bladed beta-propeller, TolB-like (InterPro:IPR011042); BEST Arabidopsis thaliana protein match is: NHL domain-containing protein (TAIR:AT1G23880.1); Has 7202 Blast hits to 4120 proteins in 426 species: Archae - 63; Bacteria - 1459; Metazoa - 1476; Fungi - 468; Plants - 264; Viruses - 2; Other Eukaryotes - 3470 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR