K03514

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T1
	whole plant (PO:0000003)	decreased height (PATO:0000569) (Adult plant::Plant height::short)
	cauline leaf (PO:0000013)	abnormal (PATO:0000460) (Cauline leaf::Others)
	rosette leaf (PO:0000014)	decreased size (PATO:0000587) (Rosette leaf::Shape::small) increased width (PATO:0000600) (Rosette leaf::Shape::wide) abnormal (PATO:0000460) (Rosette leaf::Others)
	stem (PO:0009047)	decreased thickness (PATO:0000592) (Stem::Shape::thin)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K03514

Determination of introduced cDNA(s)

J033032F08 - Rice Full-length cDNAs - Original: J033032F08

full reading [+] show sequence

GCTGCTCAAG AAAAGCTCGG ATTCTTGGCG GTTTCCCCCA CCATTTCCCC 
CTCCTCGATC TGGGCCTCCT CCCCGCAAGC GTGCGCCTCG CATTCCCACC 
GAGCGTGCCT ACGTGCTGCG CTTTGCTGTG CTGCGGGAGG ATGGAGGGTG 
GGGGGAGAGG CGGCGGCCCC GTGGTGGCGG CGCTGCTGCT GGCCGCGCTC 
CTCCTCGCCG CCGTCGCTCC GGCCTCCGCG TCGTCGTACC CCGCAAAGGT 
GGTGAGTGGG TTCCTCTCCA ACGCGGCGTC GTCGGTGATG AAGCGGCTGT 
GGTCGCTCAA ATCCACCACG AAGACAGGAA GCGGAGGGAA GTCGATGGTG 
AAGTACGAGG GCGGGTACAC CGTGGAGACG GTCTTCGACG GGAGCAAGCT 
GGGGATCGAG CCCTACGCGG TGGAGGTCAC CCAGGGCGGC GAGCTGCTCG 
TCATGGACTC CATGAACAGC AACATCTACA GGATCGCCCT GCCGCTGTCT 
CGATATAGCA GACCAAAGCT TGTAGCTGGT TCTCCGGAAG GATTTCCTGG 
TCATGTTGAT GGAAGGCCTC GAGAGGCCAG GATGAACCAT CCAAAGGGAT 
TTACGGTGGA CGGCAGGGGT AACATTTATG TGGCTGATGC TATGAACATG 
GCTATTAGAA AGATCAGTGA CACAGGGGTT ACAACTATTG CTGGGGGGAA 
ATCAAGCAGA GGAGGGCATG TTGATGGACC AAGTGATGAT GCAAAATTTT 
CTACTGATTT TGAAGTCCGC TATATTGGCA GTAGCTGCTC CCTTTTGGTG 
ATTGACAGAG GAAACCAAGC GATTCGGGAG ATTCAACTCA ACTTCGATGA 
CTGTGTATAT CAGTATGAAG CTGGTTTTCC TCTAGGAGTT GCGGTGCTTC 
TTGCTGCTGC GTTCTTTGGC TACATGCTCG CGTTGCTCCA ACGCAGGGTA 
TTAGGGATGG TGTCAACAGA AGATGAACCT GAGACTCAGA CTCCACTAAA 
AGCTAGCATT GCAAGCATCC CTCCATACCA GAAGCCGCTA AAACAATCTG 
TCCGTCCACC GTTAATCCCA AATGAGGATG AATCTGAGAA ACAAGAGGTT 
GAAGAGGGGT TCTTTACCTC AATCGGTAAA CTCATCGTGG GAGCCAAATC 
GTCTGTTGCA GAGATAGTTG GTGCAGCCTT TTCTAGAAAG AAGCGTTTAA 
ACATTCATCA GCAGCAGGCT AGAGTACGCT CTTGGCCGGT TCAAGAAAGC 
TACGCCATCC CGCGGGATGA GACGCCTCCA CCACTGGATA CAAGAACTCC 
AACCCCACGC AAGAACTATG CTTTCATGTC AAAGGAGCCC GAAAAGATCC 
ACCACATCCG GCATGGTCGG TCTCAGTTCA ATGGTTGGAA CGGAGACGCA 
CCTCAGCAGC AGCAGCAACA GCAGCAGCAG CAGCAAATAC ATCACCAGCA 
GTACTTACAG CATCATAGGC AGTATTCATC AGGACCGCAA ACTTTCTATG 
AGCCAAGCTG TGAGGCAACA AACGAGATTG TCTTTGGAGC CGTGCAGGAG 
GTAGACAGCA AGCGCCGCGC TGTGGAGATC AAACCCATGA ACCATGGCGA 
TCCGCAGTAT GACCAAGATG GGTTGCGGCA CCGCAGCAGC TACACCGGTT 
ACAGCAACAA CTGGTAGATG GCCAGATGTC CTTTTTTGCA GCTACATGAT 
TAGATTTACT GCTCGTTAAG TTATTTTGCC GTCGTCGAAT TTGTACTGCC 
TGAAACAGAT AAATAGAAAT TCAGGAAGTA CCGGTGATAT GGGCAAAGTC 
GAAAGCTGGT TTTTGCTGGA TGAACGTCGT GATCTTAGAC CTCTACTGAT 
ATATATATCT ATGTAAATGG AATGTGTTTT TCGCGTCCG

Gene models with high sequence identity

AT1G70280.2 [+] show detail - NHL domain-containing protein
E-value: 2e-114; Score: 410.00

InterPro Scan Digest

Program	Description	E-value
Gene3D	Six-bladed beta-propeller, TolB-like	6.1e-06
HMMPanther	RING ZINC FINGER, C3HC4 TYPE	0.0003
HMMPanther	RING FINGER-CONTAINING PROTEIN-RELATED	0.0003
superfamily	NHL repeat	6e-07

See the detailed result >

AT1G70280.2

Model type: Protein coding
Short Description: NHL domain-containing protein
Computational Description: NHL domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NHL repeat (InterPro:IPR001258), Six-bladed beta-propeller, TolB-like (InterPro:IPR011042); BEST Arabidopsis thaliana protein match is: NHL domain-containing protein (TAIR:AT1G23880.1); Has 7202 Blast hits to 4120 proteins in 426 species: Archae - 63; Bacteria - 1459; Metazoa - 1476; Fungi - 468; Plants - 264; Viruses - 2; Other Eukaryotes - 3470 (source: NCBI BLink).
Link: InterPro Scan - TAIR