K03526

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K03526

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K03526

Determination of introduced cDNA(s)

  • J033052D01 - Rice Full-length cDNAs - Original: J033052D01

    full reading [+] show sequence

    Nucleotide sequence: J033052D01 - full reading 
    GACCTACTCT CTCTCTCTGT CTCTCGCTCT CGCCGTCGCC GAGCTAGTTG 
    AGCCGCGGAT GGATAGCCCC GGTGGTGCGG CGGCGGCGGC GGCGGCGGCG 
    GAGTCCAGCA ATCGCGCGGG AGAAGATGCT AAAAGTGATG GTGTATCTTG 
    TCAGAATTCG CGACGGCCAA ACCTTTCATT ACAAATACCA AACAGGGCAT 
    TTGATGACAC TCTGCCAACG TCAACTAGAA TCAAAATATC ACCCAGCCCA 
    AATTCTGCAA GAAGTGGTTT ACCACCAAGG CCGAATTCAA CTAGAACAAA 
    ATCATCCATC AGGGGCATCA TTCCACAAAG GAGCTTCAAA GCAAAGAGTT 
    CATTACAGGA TGGTGACCAG ACAATTCTTC TAATTCCTGA CACACCATCA 
    TCATCAGGAC AGCAGGTGAA GGCAACTACA TCAAGATCAT TTTCTTTCAC 
    AAAGGTCATC AACTCCTTAT CAGCGAAGCG AACCCACTCT CTTCCAGTTA 
    CTCCTGTTGC AGCTTCAGGA CCTTCTTCTC ATGAAGGTCA TGCAGACAAC 
    CTGCCAAGTA CAGTTAAGAA TGAGGTTGAA ACACAAATTA GGCGCTCACT 
    CTCAGCACCA GGAAATCATG ATAGTAAGGA TCTGAGGAGG ACGGCTTCAT 
    CAGGCCTTAT ACGTGTGATT CCCACAACCC CACGACCTGT TCCTGTTGAA 
    ACTGTTGCAT CAAATGATGG CATTGAAGAA GCAGTAGATG CTCCTGAAGA 
    TGGAGGTGAA GACATTCCTG AAGAAGATGC TGTCTGCAGA ATTTGCCTAG 
    TTGAACTCAA TGAAGGAGGT GAAACACTTA AATTGGAGTG CAGCTGCAAG 
    GGAGAACTTG CTCTTGCACA CCAGGAGTGT GCAATAAAAT GGTTTTGCAT 
    CAAGGGAAAC AAGACATGCG ATGTTTGCAG GCAGGAAGTT CAGAATCTAC 
    CTGTGACTTT ATTGAGAATA CAGATTCGAA CTGTTAACAG ACAACCGCGG 
    AATGGTGTTC AGCAAAGAGC AGCACATCCA CACAGATTTT GGAAGGAGAC 
    TCCAGTTCTA GTCATGGTCA GCACGCTTGC GTACTTCTGT TTCTTGGAGC 
    AACTCTTGGT TGCTGATATG AAGTCACGTG CACTAGCTAT TTCTTTGCCT 
    TTCTCCTGTC TCCTGGGCAT ATTTTCTTCC ATCCTCGCAT CCACAATGGC 
    AACCGATAAT TACCTATGGG CTTTCGCTAC GTTCCAGTTT GCTTTCCTAA 
    TCCTATTTGC TCATATTTTC TACAACTTGT TAAAAATGGG GGCAGTCCTT 
    GCAATCCTAC TTGCATCGTT CACTGGTTTC GGCATCGCTA TTAGTCTAAA 
    TGCAATGCTA ATAGAATACC TGAGGTGGAG ACTCCTGCGG AATCAACGGT 
    TAACTCAACG TAGAAATCAC AGACATGGTC AATCTGGAAA CAATGCTTCA 
    AACGAGAACA CTGCAAGTAA TGCTAGGCAG CAAGGCAGCG GAAGCGATCA 
    ACAGTCTGCA GAACATGGCT GAAGATGATC CATCTGTGGT TTTGCAGGTA 
    TCATGGTGAT GATAAAATTC AAAATCAAAA GTGTTAATGA ATGAATGGAA 
    TAAAGGCGCC ACTGGTAAAA CCGCAAATCT GCAATTCCAA GAATGCCATG 
    GCCGGTTGCC ACCTAAGTTG ATCGTGAAAC AAAGTTATTA TTCAGAAAAA 
    GGGGGCTCTC AAGTCTCTCA ACTCTGAACC AAAAAGGTCC AGCAGTCTCC 
    ATTTACTCCC GGTTATAGTT TAGTAGTCCA GTGTGATATG TGTGTTTATG 
    AAATGTATAA ATTGCGAAAG CAAATACTAC ACACCGACCT TTGTATCACA 
    ACCATGAACA AACTGTATAT AGCTCATCGT TGTCGATTTT

    Gene models with high sequence identity

    1. AT5G60580.3 [+] show detail - RING/U-box superfamily protein
      E-value: 4e-84; Score: 309.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan Zinc finger, RING-CH-type 18.792
    HMMPanther ZN FINGER PROTEIN STAT 8 0.0000086
    HMMPanther MEMBRANE ASSOCIATED RING FINGER 0.0000086
    superfamily RING/U-box 0.00000037
    Gene3D no description 0.000000000073
    HMMPfam Zinc finger, C3HC4 RING-type 0.000055
    HMMSmart Zinc finger, RING-CH-type 0.0000000000000013

    See the detailed result >

    AT5G60580.3

    Model type
    Protein coding
    Short Description
    RING/U-box superfamily protein
    Computational Description
    RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Zinc finger, C3HC4 RING-type (InterPro:IPR018957), Zinc finger, RING-CH-type (InterPro:IPR011016); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT3G09760.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR