K03532

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K03532

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • dark green (PATO:0001249)
    (Rosette leaf::Color::dark)
  • present in greater numbers in organism (PATO:0000470)
    (Rosette leaf::Number::many)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
sporophyte vegetative stage (PO:0007134)
  • decreased speed (PATO:0000304)
    (Adult plant::Growth::slow)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K03532

Determination of introduced cDNA(s)

  • J013107N20 - Rice Full-length cDNAs - Original: J013107N20

    full reading [+] show sequence

    Nucleotide sequence: J013107N20 - full reading 
    GTATGTATTG TATATAGCGA GCCCTACCTA CTCCACAAAA AGAGTCCTCT 
    CCTCTCCTCT CCTCTCCCTT GCCACCACCA AACTGCAATT AATTGTTTGT 
    TTCGCAAAAC AAGCATCCTC GCCTCGGCGT CCCAGATCTC TGCTGCTGGG 
    CTGGGCTGCC TGCCTGACAA GAGAGGCAGC AGCCATGGCG TTCGACGCCT 
    TCACCGACAA GAACGCCGTC TTCCGCCGCC TCAAGGCCAA GCCCGAGAAC 
    AAGATGTGCT TCGACTGCAG CGCCAAGAAC CCCACCTGGG CCTCCGTCAC 
    CTACGGCATC TTCCTCTGCC TCGACTGCTC CGCCGTCCAC CGCAGCCTCG 
    GCGTCCACAT CACCTTCGTC AGGTCAACAA ACCTAGATTC ATGGACTCCA 
    GATCAACTGA AGATGATGGC TTTTGGAGGC AACAATCGTG CCCATGCTTT 
    CTTTAAACAG CACGGGTGGA CAGATGGTGG CAAGGTCGAC GCAAAGTACA 
    CGTCAAGGGC TGCTGAGCTG TACAGGCAGA TACTGCAAAA GGAAGTTGCC 
    AAGAGTTCTG CTGATAACGT CTTGCCATCG TCGCCAGTTG CAGCGTCTCA 
    ACCACAAAAT CCATCCGATG ACTTCCCTGA GTTCAAGCTA CCAGAGGCAC 
    CAGCAGAGAA TACCAATGGG AAGCAGGAAC CTGATGTCAC CAATTCGCAA 
    AAAGCACCTA CGCAGACACG AAAAGCCCCT ACTCATCCCA CTTTTGCCAC 
    TTCTGTAAAG AAGTCCATTG GTGCGAAGAA GATTGGAGGC AAGACTGGAG 
    GGCTTGGTGT TAAAAAGCTC ACCACAAAGC CAAGTGAAAG CCTGTATGAT 
    CAGAAACCTG AAGAGCCAAA ACCTGCTGCC CCAGTAATGA CTACTTCCAC 
    CACAAAAAGT GGCCCGTCCT TGCATTCACG TTTTGAATAT GTGGAGAATG 
    AGCCAGCAGT TGATTCAAGA AATGGAGGAA CTCAAATGAC TGGCCACGTA 
    GCACCACCAA AATCATCAAA CTTCTTTCAA GAGTACGGAA TGGATAATGG 
    GTTCCAAAAG AAAACAAGCA CAGCTGCCAC AAAGACCCAG ATTCAGGAGA 
    CTGACGAAGC AAGGAAAAAA TTCTCTAATG CAAAGGCAAT TTCATCATCT 
    CAGTTTTTTG GCAATCAAAG CAGAGAAGAG AAAGACGCTC AAATGTCCCT 
    TCAAAAGTTT GCGGGTTCTT CGTCCATTTC AAGTGCTGAT CTTTTTGGCC 
    GCCGCGACAT GGATGACTCG AATCTGGATT TAAGTGCTGC GGATCTCATC 
    AACAGAATAT CATTCCAGGC ATCTCAAGAT CTGTCTTCCC TCAAGAATAT 
    GGCTGGAGAA ACTGGAAAGA AGCTGACATC TATAGCCTCC AATTTTATCA 
    GCGACCTCGA CAGAATCCTT TGAGTGGTTG ATGGGGCGAG ATCATTAGCA 
    TTTTTTGTTT TGGCAAACCT GCACAGAATA CCGTATTGAG TTTAAAATGT 
    GGTGCAGCTC AGAGAAGCAT TTGTTGCACA GCTATGTAGA TGAAAGTAGA 
    GGATTGGCAA TTATGCGTCT GTATTCTTTT TTCCTTTTTT ACTATTGTTG 
    GAACCCTGTC CGCATGAAGA TATTTTTATT CGTTTCTTGA CAAGATTGAA 
    ACATACGATG GTATTCATTC CAGTTAGTGG TATAGCTGGG AAGAAAAGGT 
    ATACTTTGAT GTGCCTGTGC T

    Gene models with high sequence identity

    1. AT5G46750.1 [+] show detail - ARF-GAP domain 9
      E-value: 1e-108; Score: 390.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan Arf GTPase activating protein 26.054
    HMMPanther ARF GTPASE-ACTIVATING PROTEIN 2.7e-125
    HMMPanther CENTAURIN/ARF 2.7e-125
    superfamily Arf GTPase activating protein 7.2e-39
    HMMPfam Arf GTPase activating protein 8.2e-36
    HMMSmart Arf GTPase activating protein 3e-47
    FPrintScan Arf GTPase activating protein 1.1e-23
    FPrintScan Arf GTPase activating protein 1.1e-23
    FPrintScan Arf GTPase activating protein 1.1e-23

    See the detailed result >

    AT5G46750.1

    Model type
    Protein coding
    Short Description
    ARF-GAP domain 9
    Curator Summary
    A member of ARF GAP domain (AGD), A thaliana has 15 members, grouped into four classes.
    Computational Description
    ARF-GAP domain 9 (AGD9); FUNCTIONS IN: ARF GTPase activator activity, DNA binding, zinc ion binding; INVOLVED IN: regulation of ARF GTPase activity; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Arf GTPase activating protein (InterPro:IPR001164); BEST Arabidopsis thaliana protein match is: ARF-GAP domain 8 (TAIR:AT4G17890.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR