K03534

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K03534

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K03534

Determination of introduced cDNA(s)

J013123B09 - Rice Full-length cDNAs - Original: J013123B09

full reading [+] show sequence

GTGTTTCCTC TTCCTCTCGC ATCCTAGCGG CAGCGGCAGC GGCAGCCTCC 
TCCTCCTCCG CCGCCGCCGC TCCTCTTCCC TCTCCCAACT CCCGTACGGG 
CGTACGGCCG CCTCGTCGCC GGATTTTTTT TTTCGTTCCC CCGGCGAGCT 
TGCACTCTCT TTTCTTCGAT TCTCTTTCGG CTTTGCTTCT TCGGTCGCTT 
TTTTTTTTGG CTGTTCCTGG TCGATCCCGG CGAAGGAGGT GGTCGGGAAG 
CAAGATTTGA ACTACTCCTC CTCATGGCTT CCATGCCGCA GCTGGAGGAA 
AAGGATTCAT CCGATTTGGC AATCAACAAA GGCCCGTCGC TGGATCTTGT 
CAAATCTCCC TTGATGATGA ATGATGCATC TGCAACTGTA ACTGCAATGC 
AGCCCAACGA GGGGATGGAG GAGTTCCCTG TCAAGGTTCG GAAGCCTTAC 
ACGATCACCA AGCAGCGGGA GAAGTGGACG GAAGAAGAGC ACGACAAGTT 
CCTTGAGGCA TTGAAGCTGT ATGGTCGCTC TTGGCGTCAG ATACAAGAGC 
ACATTGGCAC AAAGACTGCT GTCCAAATTC GGAGCCATGC CCAGAAGTTT 
TTCTCAAAGG TGGTGCGTGA GCCCGGTTCC AATAATGCGA TTGAGATCCC 
TCCACCTAGG CCAAAGAGAA AACCACTTCA TCCGTACCCT CGAAAGTGTG 
CGAATTCTGG ATCGGACGCA AATCCAGCAA CAGCGCAATT GAAGCTTGCT 
CCTGGCTCAT CTTCATCTGG CTCTGATCAA GAGAATGGTT CTCCTATATC 
GGTGCTATCT GCGATGCAGT CAGATGCTTT TGGATCGTCA GTATCCAATC 
CATCAACCAG ATGTACCTCC CCAGCGTCAT CTGACGATGG AAATAACATT 
CCCACATTCA CGAGTGGGGA AGATAATAAT GTGCCTTGTG AACCAACAGT 
GATAGATCCG TCCCAGTCCC ACAAGGAAAT AGACCAAGAT AGAAAAGACG 
TGAATAATAT GTCTGAAGAG GATTCTTCAG AAGAAGAGGT GCAAGAAACA 
AGCTTGAAGC TATTTGGGAG GACAGTTGTC ATCCCAGATC CAAGGAAGAG 
AAGCTCCTCA GATCCGAAGC ATGAAAGTGA GGAGCAGATA TCACAGCCTT 
CCAATGAAGA AATGTTGCAG GCTTCTTCAT CGGTTGGGGA GATTCCAGCG 
GCATATTGTG CACCAAATGG TTGGTTTATG TCATACAATT CTTTCCCATT 
CCAATTCGGT GAATCAGCGG CAGATGCTAG AATTCCCCCT TTACACGTGT 
GGTGGCCTTA CTACGGTTTT GCTCCCATTA GCCATCCTAG AGGACTAAGC 
ACAGTGATGC AGCAGACTGA AGGTAGTGAC GAGAGTGACG GTGTGAAGAG 
CCACTCATCC GAATCAAGTT CGGACTCCGG GGAAAATGTG CAGATGACCG 
CTCCCCAGAG CTCGAGAATA GTGGAATCAC TTGGAGCGAT TTACGTCCGA 
GACTCAGGTT CAAGTTTTGA GCTAAAACCG AGCGCAAATT CAGCGTTTGT 
AAGAGTGAAG CCAAGCAACA GCGGAGATGA AGGGGTAATA AGGGGATTTG 
TGCCTTATAA AAGATGCAAA TTTCAATAAC GCAGGCAAGC GGGTATTTTC 
TTGAAAGCTG CTAATTTAAC AGAGAAGAGT AGGAGCACGA ACGTTGCTTG 
CATCACTGTA TTTTTTTTTG TTTGTTTGCG GGGATTGGTG GTGCATTAAT 
GAATTGTTTG CTGCTTGCAC CTTAAAAAGG ATAGAGATGG TGTAAGCAGT 
TTGTTGCTGT AAGAATGTTA CATGTAGACT AGTACTTAAA ATTATAGGGG 
ATGCCAATCT CTGCCCTGAT GATGTTGTAA AAGCAGTACG CACCATGTTT 
TACCTCTGGT TGAAAGCTAA GCTGTTAATG GAAATTGATC TC

Gene models with high sequence identity

AT5G17300.1 [+] show detail - Homeodomain-like superfamily protein
E-value: 3e-32; Score: 137.00

InterPro Scan Digest

Program	Description	E-value
HMMTigr	Myb-like DNA-binding domain, SHAQKYF class	4e-22
ProfileScan	HTH transcriptional regulator, Myb-type, DNA-binding	21.585
superfamily	Homeodomain-like	4e-15
HMMPanther	SWI/SNF COMPLEX-RELATED	0.00016
Coil	coiled-coil	0
HMMPfam	Myb, DNA-binding	4.7e-14
HMMSmart	SANT, DNA-binding	2.9e-14

See the detailed result >

AT5G17300.1

Model type: Protein coding
Short Description: Homeodomain-like superfamily protein
Curator Summary: Myb-like transcription factor that regulates hypocotyl growth by regulating free auxin levels in a time-of-day specific manner.
Computational Description: REVEILLE 1 (RVE1); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447); BEST Arabidopsis thaliana protein match is: Homeodomain-like superfamily protein (TAIR:AT5G37260.1); Has 1557 Blast hits to 1521 proteins in 166 species: Archae - 0; Bacteria - 3; Metazoa - 201; Fungi - 29; Plants - 1060; Viruses - 9; Other Eukaryotes - 255 (source: NCBI BLink).
Link: InterPro Scan - TAIR