K03608

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K03608

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K03608

Determination of introduced cDNA(s)

  • J023110A15 - Rice Full-length cDNAs - Original: J023110A15

    full reading [+] show sequence

    Nucleotide sequence: J023110A15 - full reading 
    GAGACGAAAC ACGCCAAGGA AGAAAAAAAA ATGGGCGTCC AGCATCTGCT 
    CAAGCTGAGG ATGGCGTCGC CCCACCCGCA CCCGCACCCC GGCGCGCCGC 
    TCGCCGCGCG CCCGCTCTCC GCGCTCGCCT CCTTCTTCCT CGCCCGGCCC 
    TCCTCCACCG CCGCCGCGCC TCCTCCTCGG CACGTCACCC TCTCGTGCTC 
    GCGGCCGCAC TGCAACCACA ACCAGTGGGC CGCCAGCCGG TGCCGCGGGA 
    CGGCGGGCCG GCGGCGGCTG CAGGTCGTCG TGGCGATGTC CTCGTCGGCG 
    CCGCCGCCGC CTCCGGGATC CGTGCAGAAG TCGGAGGAGG AGTGGGAGGC 
    CATCCTCTCG CCGGAGCAGT TCCGCATCCT CCGCCTCAAG GGCACGGAGT 
    ATCCTGGAAC AGGTGAATAT GACAAGCTCT TCGCTGAGGG TGTTTATGAA 
    TGTGCTGGAT GCGGGACTCC ATTGTACAAG TCATCTACTA AATTCAACTC 
    AGGTTGTGGT TGGCCAGCAT TCTATGAAGG ATTTCCCGGA GCCATCGCAC 
    GAACGCCTGA TCCTGATGGC AGGCGAATAG AGATCACCTG TGCGGCTTGC 
    GGAGGACATT TAGGACATGT CTTCAAAGGG GAGGGGTTCA ACACGCCTAC 
    AGATGAGCGG CATTGTGTTA ACAGTATCTC ACTCAAGTTC ATTCCAGCCT 
    CAGAAGATAG TAAGCTTTGA GCATGGAAGT ATAAGCCCGC AATAGAACAG 
    TCTGCGCAGT CATAGTAAAC CTGTGATTAT TAAAAAAGTA TCGGATTTTT 
    CAGAAAGCAA TTTATACTCT GCGGTTTGTC AATAATGCGA AATACCAAGT 
    CTGATGATTG TCGAAAACTT TTGGCTGTAA CCTATTTACA CTTCCAGTTC 
    TACTTTTTTC TGATAACCAG AGAAGTTCAT ATCCGTACAT AATTGAACAC 
    GGAAGAAACT ATCCGATGG

    Gene models with high sequence identity

    1. AT4G21860.3 [+] show detail - methionine sulfoxide reductase B 2
      E-value: 6e-63; Score: 238.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Mss4-like 1.4e-48
    HMMPfam Methionine sulphoxide reductase B 3.7e-51
    HMMTigr Methionine sulphoxide reductase B 8.6e-49
    HMMPanther METHIONINE SULFOXIDE REDUCTASE 6.6e-54

    See the detailed result >

    AT4G21860.3

    Model type
    Protein coding
    Short Description
    methionine sulfoxide reductase B 2
    Computational Description
    methionine sulfoxide reductase B 2 (MSRB2); FUNCTIONS IN: peptide-methionine-(S)-S-oxide reductase activity; INVOLVED IN: oxidation reduction; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Methionine sulphoxide reductase B (InterPro:IPR002579), Mss4-like (InterPro:IPR011057); BEST Arabidopsis thaliana protein match is: methionine sulfoxide reductase B3 (TAIR:AT4G04800.1).
    Link
    InterPro Scan - TAIR