K03609

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K03609

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
stem (PO:0009047)
  • increased thickness (PATO:0000591)
    (Stem::Shape::thick)
  • decreased thickness (PATO:0000592)
    (Stem::Shape::thin)
  • abnormal (PATO:0000460)
    (Stem::Shape::zigzag)
  • present in greater numbers in organism (PATO:0000470)
    (Stem::Number::many)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K03609

Determination of introduced cDNA(s)

  • J023049J05 - Rice Full-length cDNAs - Original: J023049J05

    full reading [+] show sequence

    Nucleotide sequence: J023049J05 - full reading 
    GAGCGGCGGC GGCGGCGGCG GCGGCGGGCG TCGCCGGCGA GCAGAGCGGA 
    GGAGGGAGGA AGCGCGCGAG CGAACGATGG AGGCGGCGGC GGCGGTTACG 
    AGGTTGTCCT TCGTCCCCCT CGCGGCGGCT GCGAGGCCAC TCCTCGCCGG 
    CTTCATGCGC CCCCGAGTCT TCGCGTCCAT CTCCTCCTCC TCCTCCTCCT 
    CTCCCTTCTC CGGTGGAGGC GGAGGCCACT TCTTCGGAGG CGGAGGCGGA 
    CGCGGTAGGG GCGGCGGCGG AGGCGGAGGC GGAGAAGAAT ACGGTGCAGG 
    TGCTGCTGCA GCGGCCTCCG CCGCCGCCGC CGTGGTTCTC GGCGAGACCG 
    AGACGGCGGA CGCCGACGTC ATCCTGCTCC GCGTCGGGGG GATGTCGTGC 
    GGTGGATGCG CCGCGAGCGT GAAGCGGATT CTCGAGAGCC AGCCTGAGGT 
    TACTTCTGCC ACAGTCGACT TTGAGAAAAA AACGGCTGCC GTGTGGACAA 
    CACCTGAAGC CAAGGCAACA AAAGACTGGC GGAAGCAACT GGGCGAAAAG 
    CTTTCACATC ACCTGAGCAC TTGCGGATTT CAGTCTCATC TGCTTGATGA 
    AGAAGAACCT GATTCTGGAT CTCAACAGTG AGAACCCTTG CAGTTTTACA 
    ATCAGAGGGT TCTTGAGAGC AGTACCTACC TACTTACCCT TGTGGAAGTT 
    ATATATCGTC TCTGAAAAAG TACATTCTGT TTGAGAGTTT TGTAGGTCTC 
    AATCACGATT TTGTTCTTGA ATCCAGCCAC TGACAACTAC AAGGCCTAGA 
    GATTATGCTC AAATCCTTAT ACAGGAAATA GAGAAATTTC TTTTGGATTT 
    AAGGTTCAAA TACAGAAGTA GAATTCGATC ATTGTATATT GTCACTACCG 
    ATATCAATGA ACATATATTG TC

    Gene models with high sequence identity

    1. AT4G33520.3 [+] show detail - P-type ATP-ase 1
      E-value: 1e-23; Score: 107.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Heavy metal transport/detoxification protein 0.0000000000036
    PatternScan Heavy-metal-associated, conserved site 0
    Coil coiled-coil 0
    HMMPanther COPPER-TRANSPORTING ATPASE PAA1 4.6e-19
    HMMPanther ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter 4.6e-19
    ProfileScan Heavy metal transport/detoxification protein 15.806
    HMMPfam Heavy metal transport/detoxification protein 0.00000000000013
    Gene3D no description 0.0000000054

    See the detailed result >

    AT4G33520.3

    Model type
    Protein coding
    Short Description
    P-type ATP-ase 1
    Curator Summary
    Encodes a putative metal-transporting P-type ATPase.
    Computational Description
    P-type ATP-ase 1 (PAA1); FUNCTIONS IN: copper ion transmembrane transporter activity, ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism; INVOLVED IN: photosynthetic electron transport chain; LOCATED IN: chloroplast, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, P-type copper-transporter (InterPro:IPR001756), Heavy metal transport/detoxification protein (InterPro:IPR006121), ATPase, P type, cation/copper-transporter (InterPro:IPR006403), ATPase, P-type, ATPase-associated domain (InterPro:IPR008250), Heavy-metal-associated, conserved site (InterPro:IPR017969), Haloacid dehalogenase-like hydrolase (InterPro:IPR005834), ATPase, P-type, heavy metal translocating (InterPro:IPR006416), ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter (InterPro:IPR001757), ATPase, P-type phosphorylation site (InterPro:IPR018303); BEST Arabidopsis thaliana protein match is: P-type ATPase of Arabidopsis 2 (TAIR:AT5G21930.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR

  • J033135A20 - Rice Full-length cDNAs - Original: J033135A20

    full reading [+] show sequence

    Nucleotide sequence: J033135A20 - full reading 
    GCCTAATCAC CCAACACAAT CTTGCCATAC CATGGGTCGA TCGAAACGGG 
    AAGTTGCCCC GCCACCTCAA GCTTTGCCGG CATCCTTCCC ATCTGGCATG 
    TGGCTGGCTA CTCCGCCGAT GCAGGCCTCC TTTGCTCCCG GTGGCTGGCA 
    AGGTACAGCG GCTGCACCTG GTGGCTGGCA AGGTATGGCG CCACCGCAGC 
    CGCCGCAGGC TCCATTATTT GCATACGGCG CCAATACTTC TGCTCCCCAT 
    CTGGCCCAGA TGAAGCAAGG GTCAGATCGT AGTTCCATGG ACGATTCCTT 
    GTCAGATCTG CAAGAAAGTG GTATGGACTC ACGTCCACCT GGTGGATTCT 
    TAAGTTACTT TCAGGATCCA TCAAGTTTAC AGAATCATCA ACCTTCTATA 
    CCACTAAATT ATTATGCTAC TCAGCAAGCA GCACCATGGG CACCTTCACC 
    TGCAGAATAC CGAAGTCCAG TTACAAAATC AGGTCCAGGA GAACAACACC 
    CTATCAACAT TGATAGTGGT GGTGAAGAAA CCCCCACTGT TAGGACTGAG 
    AAGCGGTTGA CATGGACACA TGAAGAGGAC ATAAGGCTAG TGAGTGCTTG 
    GTTGAACAAC TTGAATGATT CGATCAATGG TAATTTCAAG AAAAATGATT 
    GTTATTGGGG AGATGTTACA ACTGCCTACA ATAGCACCAC TCCGAGAAAT 
    AGGATGAGGC AAGAAAAACA AATCAAGGAC CGCTTTCATA AAATTAAGAA 
    AAATGTTGGC CGTTTTTGCT GTGCTTATAA GGAGGTGAAA TCTATCTATG 
    TTAGTGGACA AAATGAACTA CAATTGATGG AGAAGGTCCA TGCAACATAT 
    GAAGCAGATT ACAAGGAAGG CCAATTTACA TTTCTGCATT GTTGGAAAGC 
    TCTCCGTGAC CAACCAAAGT GGCATGCTTA CTTGGAGGAA CTTGAGAAGC 
    CAAACAAAAC AAAGTCAGAT AATGAAGTGG AAGTAAGGGA ACTTACATCC 
    ACTCCTAATA GCCCTGAAGA TATTATACGT CCTGAAGGAA CCAAAGCTGC 
    TAAGGCGCGG CGTAATGGTA AAGACAAACG CAAAAGGAAG GCAAAGGTTT 
    ATCTATCGGA TATGGATGAT GAGATTGACA AGCCTAAAGA AGTTCAGAAC 
    ATGGCAGATA AAGGTCGCGA TGAGCTACTG GAGACTCAGA GGCGTGTTTC 
    TAGTGAGAAT CTTGAATCAA AAAGGTTAGC TCACCTGGCA GCCATGGAGC 
    ACAAGGAGGC GGTTATGTTG GAAACATATC GGGCTCTCAT GTTGCAAGAT 
    ACAAAAGATA TGCCTGATGA TGTCAGATTT GAGCATGTGA TGGCATTGAA 
    GAGTATGAGG GAAAAGTTGT TTCCTAAAAC TAAGGTATCG AAGATGCTCA 
    TTTTGGCTGC TTGTTTTGGC AGTGCTTCAG CAAGAGAAGC TACTTATTAC 
    ATAATTTTCA GTAATCCACC GATTTTATCA AAACAGAACT TGTGTTCTAA 
    CTATCTACTC AGTATGTCGT TGTATGGGTC ACTGTTATGG CCTATGAATG 
    ATGTATGGAT CATTGTAATA GACTAAGTTC TTTTGTCAGT CTATGAACTA 
    ATTAGTAGTT TTGCC

    Gene models with high sequence identity

    1. AT3G47680.1 [+] show detail - DNA binding
      E-value: 1e-21; Score: 102.00

     

    InterPro Scan Digest

    See the detailed result >

    AT3G47680.1

    Model type
    Protein coding
    Short Description
    DNA binding
    Computational Description
    DNA binding; BEST Arabidopsis thaliana protein match is: glutathione S-transferase THETA 3 (TAIR:AT5G41220.1); Has 545 Blast hits to 544 proteins in 20 species: Archae - 0; Bacteria - 1; Metazoa - 18; Fungi - 0; Plants - 496; Viruses - 0; Other Eukaryotes - 30 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR