K03609

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K03609

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
stem (PO:0009047)
  • increased thickness (PATO:0000591)
    (Stem::Shape::thick)
  • decreased thickness (PATO:0000592)
    (Stem::Shape::thin)
  • abnormal (PATO:0000460)
    (Stem::Shape::zigzag)
  • present in greater numbers in organism (PATO:0000470)
    (Stem::Number::many)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K03609

Determination of introduced cDNA(s)

  • J023049J05 - Rice Full-length cDNAs - Original: J023049J05

    full reading [+] show sequence

    Nucleotide sequence: J023049J05 - full reading
    GAGCGGCGGC GGCGGCGGCG GCGGCGGGCG TCGCCGGCGA GCAGAGCGGA 
    GGAGGGAGGA AGCGCGCGAG CGAACGATGG AGGCGGCGGC GGCGGTTACG
    AGGTTGTCCT TCGTCCCCCT CGCGGCGGCT GCGAGGCCAC TCCTCGCCGG
    CTTCATGCGC CCCCGAGTCT TCGCGTCCAT CTCCTCCTCC TCCTCCTCCT
    CTCCCTTCTC CGGTGGAGGC GGAGGCCACT TCTTCGGAGG CGGAGGCGGA
    CGCGGTAGGG GCGGCGGCGG AGGCGGAGGC GGAGAAGAAT ACGGTGCAGG
    TGCTGCTGCA GCGGCCTCCG CCGCCGCCGC CGTGGTTCTC GGCGAGACCG
    AGACGGCGGA CGCCGACGTC ATCCTGCTCC GCGTCGGGGG GATGTCGTGC
    GGTGGATGCG CCGCGAGCGT GAAGCGGATT CTCGAGAGCC AGCCTGAGGT
    TACTTCTGCC ACAGTCGACT TTGAGAAAAA AACGGCTGCC GTGTGGACAA
    CACCTGAAGC CAAGGCAACA AAAGACTGGC GGAAGCAACT GGGCGAAAAG
    CTTTCACATC ACCTGAGCAC TTGCGGATTT CAGTCTCATC TGCTTGATGA
    AGAAGAACCT GATTCTGGAT CTCAACAGTG AGAACCCTTG CAGTTTTACA
    ATCAGAGGGT TCTTGAGAGC AGTACCTACC TACTTACCCT TGTGGAAGTT
    ATATATCGTC TCTGAAAAAG TACATTCTGT TTGAGAGTTT TGTAGGTCTC
    AATCACGATT TTGTTCTTGA ATCCAGCCAC TGACAACTAC AAGGCCTAGA
    GATTATGCTC AAATCCTTAT ACAGGAAATA GAGAAATTTC TTTTGGATTT
    AAGGTTCAAA TACAGAAGTA GAATTCGATC ATTGTATATT GTCACTACCG
    ATATCAATGA ACATATATTG TC

    Gene models with high sequence identity

    1. AT4G33520.3 [+] show detail - P-type ATP-ase 1
      E-value: 1e-23; Score: 107.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Heavy metal transport/detoxification protein 3.6e-12
    PatternScan Heavy-metal-associated, conserved site 0
    Coil coiled-coil 0
    HMMPanther COPPER-TRANSPORTING ATPASE PAA1 4.6e-19
    HMMPanther ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter 4.6e-19
    ProfileScan Heavy metal transport/detoxification protein 15.806
    HMMPfam Heavy metal transport/detoxification protein 1.3e-13
    Gene3D no description 5.4e-09

    See the detailed result >

    AT4G33520.3

    Model type
    Protein coding
    Short Description
    P-type ATP-ase 1
    Curator Summary
    Encodes a putative metal-transporting P-type ATPase.
    Computational Description
    P-type ATP-ase 1 (PAA1); FUNCTIONS IN: copper ion transmembrane transporter activity, ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism; INVOLVED IN: photosynthetic electron transport chain; LOCATED IN: chloroplast, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, P-type copper-transporter (InterPro:IPR001756), Heavy metal transport/detoxification protein (InterPro:IPR006121), ATPase, P type, cation/copper-transporter (InterPro:IPR006403), ATPase, P-type, ATPase-associated domain (InterPro:IPR008250), Heavy-metal-associated, conserved site (InterPro:IPR017969), Haloacid dehalogenase-like hydrolase (InterPro:IPR005834), ATPase, P-type, heavy metal translocating (InterPro:IPR006416), ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter (InterPro:IPR001757), ATPase, P-type phosphorylation site (InterPro:IPR018303); BEST Arabidopsis thaliana protein match is: P-type ATPase of Arabidopsis 2 (TAIR:AT5G21930.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR
  • J033135A20 - Rice Full-length cDNAs - Original: J033135A20

    full reading [+] show sequence

    Nucleotide sequence: J033135A20 - full reading
    GCCTAATCAC CCAACACAAT CTTGCCATAC CATGGGTCGA TCGAAACGGG 
    AAGTTGCCCC GCCACCTCAA GCTTTGCCGG CATCCTTCCC ATCTGGCATG
    TGGCTGGCTA CTCCGCCGAT GCAGGCCTCC TTTGCTCCCG GTGGCTGGCA
    AGGTACAGCG GCTGCACCTG GTGGCTGGCA AGGTATGGCG CCACCGCAGC
    CGCCGCAGGC TCCATTATTT GCATACGGCG CCAATACTTC TGCTCCCCAT
    CTGGCCCAGA TGAAGCAAGG GTCAGATCGT AGTTCCATGG ACGATTCCTT
    GTCAGATCTG CAAGAAAGTG GTATGGACTC ACGTCCACCT GGTGGATTCT
    TAAGTTACTT TCAGGATCCA TCAAGTTTAC AGAATCATCA ACCTTCTATA
    CCACTAAATT ATTATGCTAC TCAGCAAGCA GCACCATGGG CACCTTCACC
    TGCAGAATAC CGAAGTCCAG TTACAAAATC AGGTCCAGGA GAACAACACC
    CTATCAACAT TGATAGTGGT GGTGAAGAAA CCCCCACTGT TAGGACTGAG
    AAGCGGTTGA CATGGACACA TGAAGAGGAC ATAAGGCTAG TGAGTGCTTG
    GTTGAACAAC TTGAATGATT CGATCAATGG TAATTTCAAG AAAAATGATT
    GTTATTGGGG AGATGTTACA ACTGCCTACA ATAGCACCAC TCCGAGAAAT
    AGGATGAGGC AAGAAAAACA AATCAAGGAC CGCTTTCATA AAATTAAGAA
    AAATGTTGGC CGTTTTTGCT GTGCTTATAA GGAGGTGAAA TCTATCTATG
    TTAGTGGACA AAATGAACTA CAATTGATGG AGAAGGTCCA TGCAACATAT
    GAAGCAGATT ACAAGGAAGG CCAATTTACA TTTCTGCATT GTTGGAAAGC
    TCTCCGTGAC CAACCAAAGT GGCATGCTTA CTTGGAGGAA CTTGAGAAGC
    CAAACAAAAC AAAGTCAGAT AATGAAGTGG AAGTAAGGGA ACTTACATCC
    ACTCCTAATA GCCCTGAAGA TATTATACGT CCTGAAGGAA CCAAAGCTGC
    TAAGGCGCGG CGTAATGGTA AAGACAAACG CAAAAGGAAG GCAAAGGTTT
    ATCTATCGGA TATGGATGAT GAGATTGACA AGCCTAAAGA AGTTCAGAAC
    ATGGCAGATA AAGGTCGCGA TGAGCTACTG GAGACTCAGA GGCGTGTTTC
    TAGTGAGAAT CTTGAATCAA AAAGGTTAGC TCACCTGGCA GCCATGGAGC
    ACAAGGAGGC GGTTATGTTG GAAACATATC GGGCTCTCAT GTTGCAAGAT
    ACAAAAGATA TGCCTGATGA TGTCAGATTT GAGCATGTGA TGGCATTGAA
    GAGTATGAGG GAAAAGTTGT TTCCTAAAAC TAAGGTATCG AAGATGCTCA
    TTTTGGCTGC TTGTTTTGGC AGTGCTTCAG CAAGAGAAGC TACTTATTAC
    ATAATTTTCA GTAATCCACC GATTTTATCA AAACAGAACT TGTGTTCTAA
    CTATCTACTC AGTATGTCGT TGTATGGGTC ACTGTTATGG CCTATGAATG
    ATGTATGGAT CATTGTAATA GACTAAGTTC TTTTGTCAGT CTATGAACTA
    ATTAGTAGTT TTGCC

    Gene models with high sequence identity

    1. AT3G47680.1 [+] show detail - DNA binding
      E-value: 1e-21; Score: 102.00

     

    InterPro Scan Digest

    See the detailed result >

    AT3G47680.1

    Model type
    Protein coding
    Short Description
    DNA binding
    Computational Description
    DNA binding; BEST Arabidopsis thaliana protein match is: glutathione S-transferase THETA 3 (TAIR:AT5G41220.1); Has 545 Blast hits to 544 proteins in 20 species: Archae - 0; Bacteria - 1; Metazoa - 18; Fungi - 0; Plants - 496; Viruses - 0; Other Eukaryotes - 30 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR