K03616

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K03616

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
rosette leaf (PO:0000014)
  • increased length (PATO:0000573)
    (Rosette leaf::Shape::long)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)
fruit (PO:0009001)
  • decreased length (PATO:0000574)
    (Silique::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K03616

Determination of introduced cDNA(s)

  • J013074C24 - Rice Full-length cDNAs - Original: J013074C24

    full reading [+] show sequence

    Nucleotide sequence: J013074C24 - full reading 
    GAAACTCCTC TCGTCCTCTC AGCCAGAGGC ATCATCTTGA TATCTCTCCC 
    CATCCTCTCA CGACTCCCGA CACCAAGAAA GCAAGTATAC CATGGATTGA 
    ACATATACAC GGCCGTCACA CATCTGTCTC CTTCCCTCGT CTCCTCACCA 
    ATGATTCGGT CCAGAAACTT GCAGAGATCC TCTGCTAGTA CTTGCACAGA 
    GCCTCAGACC GAGCACTGAG GAAGCTTAAC ATCTGCCTAT CTTCTTTCTA 
    GTTCTTCCCT TTCTCTCTGT TGTTGCAGTC TTGCAGCTGC CCGATTTCGT 
    GTTCTACGAG GCAATGGCAT CCTCTGCTCC TGCTTGGGTC CCCTACGAGC 
    CAACGAGAGA TTGCTCTCAA GGGCTGTGCA GCATGTACTG CCCCCAGTGG 
    TGCTACTTCA TCTTCCCTCC GCCGCCGCCC TTCGACGTCG CCGGCACCAG 
    CGCCGACGAC TCCTCCGGCC CTGTCTTCTC CCCTCTCGTC ATTGCAATCA 
    TCGGCGTTCT GGCCAGCGCC TTCCTCCTCG TCAGCTATTA CACCTTCATC 
    TCCAAGTACT GTGGCACCGT TAGCTCCCTC AGGGGGAGGG TCTTCGGCTC 
    GAGCTCCGGT GGCGCTGCTT ATGGCGGCGG TGCCGGTAGC GGCGGCCGCC 
    ACGGCCACGG GCAGTCGAGG AGCCACGAGT CATGGAACGT CTCGCCGCCG 
    AGCGGGCTGG ACGAGACCCT GATCAACAAG ATCACGGTGT GCAAGTACCG 
    GCGCGGTGAT GGGTTCGTCC ACACCACCGA CTGCTCGGTC TGCCTCGGCG 
    AGTTCAGTGA CGGGGAGAGC CTCCGGCTGC TACCCAGGTG CAGCCATGCC 
    TTCCACCAGC AATGCATCGA CACTTGGCTC AAGTCACACT CCAATTGCCC 
    CCTCTGCCGC GCCAACATCA CCTTCGTCAC CGTCGGGTTG GCGTCGCCGG 
    AGCCGGAGGG CTGTGCTCCA GGCGAGACTG GAGGTGACAA TACACACGAG 
    GTGGTTGTGG TGATGGATGG CTTGGAAAAT CTTTGTGAAG AGCAGCAGGA 
    GGCAGTGAGC AGGGCCAGCA CTGCCGATGA TGATCACGAT GCGAAGGACG 
    TCGCAGAGGG GATGGAGGAG GCCAATGGCG CAGCCGAGAT CAGAGAAGAA 
    GGCTCGCCGC CAAAGAGGGG CGCGCCGTCG TTTGATCTTC ACCGTGACAA 
    CCGCATGTGC ATCGCCGACG TTCTGCAGGA ATCCATGGAA GACGAGCTGA 
    CGGCAGCCAG GGAGAGTGGC CTCCTCGCAG GCGGCGCTGG CACGTCAAGA 
    CGGTGCCATG GCGAGAACAG CAAGGGAAGG GGAGGCCGCA GCCGACGTGC 
    ATTGCAGCTG CAGGACGCCA TGGAGGCTCT GCCGGGGAAG AGATTGCCCT 
    CCGGTGGGAG ATCCTGCTTC AGCAGCAAGA GCGGCAGGGG AAAAGATTCA 
    GATCATCCAA TGTGAGGCGG TCAGTTCTCA TTTTCTTACT CTAGGATACT 
    GGACAAGCAA CCTTTGTTTG CATGATGAGA TGCGAATGGG AAAAAATTGC 
    AAGGACAATC ATCATAATCT GGAGATGTCG TCTTGTGATA ATGTTGATCT 
    GCTGCCTCAC TCCATGTGAT GCCACTGCCA AATCGATCCT CTGCAGTGCT 
    TGGTTGGTAA TGTCTCTTTT GTTCATAGTT GAGAAGGACC TGAGAGCTGA 
    TCTCTCTCTC TCTCTCTTTT GCTCTGCCAT TTTATACATT ACATTGACTT 
    CCCACCGTTC AATTTTTCTG TGGAGTTTGT TCTTCTGTGA GTTCACTAGT 
    TC

    Gene models with high sequence identity

    1. AT5G17600.1 [+] show detail - RING/U-box superfamily protein
      E-value: 6e-55; Score: 212.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMSmart Zinc finger, RING-type 6.3e-08
    HMMPfam Zinc finger, C3HC4 RING-type 2.1e-08
    superfamily RING/U-box 8.6e-17
    Coil coiled-coil 0
    ProfileScan Zinc finger, RING-type 12.814
    Gene3D no description 7.5e-15
    HMMPanther RING FINGER PROTEIN 38 1e-16
    HMMPanther RING FINGER PROTEIN 6/12/38 1e-16

    See the detailed result >

    AT5G17600.1

    Model type
    Protein coding
    Short Description
    RING/U-box superfamily protein
    Computational Description
    RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT3G03550.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR