K03716

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K03716

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
cauline leaf (PO:0000013)
  • decreased size (PATO:0000587)
    (Cauline leaf::Shape::small)
  • present in fewer numbers in organism (PATO:0001997)
    (Cauline leaf::Number::few)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)
  • present in fewer numbers in organism (PATO:0001997)
    (Rosette leaf::Number::few)
stem (PO:0009047)
  • decreased thickness (PATO:0000592)
    (Stem::Shape::thin)
T2  
cauline leaf (PO:0000013)
  • epinastic (PATO:0000945)
    (Cauline leaf::Shape::epinastic)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • epinastic (PATO:0000945)
    (Rosette leaf::Shape::epinastic)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
fruit (PO:0009001)
  • decreased length (PATO:0000574)
    (Silique::Shape::short)
  • abnormal (PATO:0000460)
    (Silique::Others)
stem (PO:0009047)
  • decreased thickness (PATO:0000592)
    (Stem::Shape::thin)

Invisible phenotypes

Original: K03716

Determination of introduced cDNA(s)

  • J023123D15 - Rice Full-length cDNAs - Original: J023123D15

    full reading [+] show sequence

    Nucleotide sequence: J023123D15 - full reading 
    GTCCTTCCCT TCGCCTCGTC TTCTCCTCCA CCTCCACCAA ACTCCTCCCC 
    CCCCCCCCCC CAACCAATCT TCCTCGAATC CTCCGGCTGC GCCACCACCC 
    ACCCCGCGCG CGTCGTCGTC GTCTTCGTCG TCTCCGCCGC CGGCTGCTCG 
    ATTGGCGCCG GCCAAGGAAG CGGCGAGGCG GATTCACTGC GAAGGCGATA 
    TGGCGGCAGC AGCAACGGCG GCCGACGCCG GCTCCGATCC CTCCGCGGCC 
    CTCGCCGCCG CCGCCGCCAC ATCCACCTGC GCCCACTGCC AGCGAGAAAT 
    TCCATCGTCA AACATTGACT TACATTCGGC ACACTGCGCA CGTAACCTTC 
    AAAAGTGTGA ACACTGTGGA GAAATGGTGG CCAGAAAGCT TATGGACGAG 
    CACTACAATG AAAGCCATGC TCCAGTAAAT TGCACTCTTT GCAAGGAAAT 
    TGTAACACGC GAGATCTGGG ATCTTCATAA AAGTGAACAG TGCCCACAAA 
    GGATTGTTGC ATGTGAATAT TGTGAGTTTG AGTTGCCTGC GGTTGAGCTT 
    CATGAACATC AGGATGTATG CGGAAACCGA ACAGAATTTT GTCAAACATG 
    CAAGAAGTAT GTTAGACTAC GTGAATGGAT TGGGCATGAA ATACAGTGTC 
    ATGCAAATGC AAATGCAAAT GCTTCTGCAC AGACATCAAG TGCCCGAATC 
    ATTCCAGAGA GAGAAGTGCG TCCTCCTCCA CCAGTAAGAC CGCCACGGCC 
    TATGCATGGT GCACAGCACA AGCGTCTGCT CTTCACAATT GCGGTGACTG 
    GAATCGCAGT TATGATTGGT TCGATACTTT TTCAGAGGGA GGAGAGTTTC 
    TAAGTCCAGT GTCTATGGTC TCTCCCCATC GAGTTGATTC CAACAGCAAC 
    AGCATAAAGA GTTACCTTGA TGTATAATTT ACCCCTCATA ATCAGTCTAT 
    AAAATCACTT TGTTTGTTTG ATAGTACAGT CCCTGGCATG GCTTTGTTAA 
    AAGAATTGAA ATAACCATGA AGATGCCCAT TATTCTC

    Gene models with high sequence identity

    1. AT1G09920.1 [+] show detail - TRAF-type zinc finger-related
      E-value: 2e-52; Score: 202.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily TRAF-like 0.0003
    superfamily TRAF-like 0.0032
    HMMPanther UNCHARACTERIZED 1.2e-44
    HMMPanther TRAF-TYPE ZINC FINGER PROTEIN-RELATED 1.2e-44
    HMMPfam zf-TRAF 0.00019

    See the detailed result >

    AT1G09920.1

    Model type
    Protein coding
    Short Description
    TRAF-type zinc finger-related
    Computational Description
    TRAF-type zinc finger-related; BEST Arabidopsis thaliana protein match is: Ubiquitin fusion degradation UFD1 family protein (TAIR:AT4G15420.1); Has 897 Blast hits to 860 proteins in 162 species: Archae - 0; Bacteria - 0; Metazoa - 570; Fungi - 106; Plants - 68; Viruses - 0; Other Eukaryotes - 153 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR