K03743

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K03743

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
rosette leaf (PO:0000014)
  • increased size (PATO:0000586)
    (Rosette leaf::Shape::large)
  • present in greater numbers in organism (PATO:0000470)
    (Rosette leaf::Number::many)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
fruit (PO:0009001)
  • abnormal (PATO:0000460)
    (Silique::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K03743

Determination of introduced cDNA(s)

  • J033126C17 - Rice Full-length cDNAs - Original: J033126C17

    full reading [+] show sequence

    Nucleotide sequence: J033126C17 - full reading 
    GTTGGCATCA GCAGCAGCAC CGCGGCCGCA TGTGGGCCGC CTCACCGGCC 
    TTCCGCAGGC GCCTCTTCCT CCTCCGTTCC CTTTCCCCCT CCCCCTGCGC 
    CGCCCTCCCC GGCAACGCCG CCTGCTCCTC CTCCCCCTCG CCGTCGACCT 
    CCATTCGGGT CAACGCGATG TCGGCATCGG GCCCCGTGTA CGAGGCGGAC 
    GCTGAGGCGG TGGTCCGCCG GATCACCCCG CCGCTCGACC GCGCGCGCCA 
    CAAGGGCCAG GCAGGGAAAA TTGCTGTAAT TGGTGGATGT CGTGAGTACA 
    CTGGTGCTCC CTATTTTGCA GCGATTTCTG CCTTGAAAGT TGGTGCAGAT 
    CTCTCACATG TTTTCTGCAC AAGAGATGCT GCAACGGTAA TAAAGAGTTA 
    TAGCCCTGAG CTGATTGTAC ATCCAATACT AGAGGAATCT TACAGTGTAA 
    GCGATGGTGA GAGAGAATCT GTTTCTTCTA GAATTCTCAC AGAAGTAGCA 
    AAGTGGATGG AGCGCTTTGA TTGCATCGTT GTTGGTCCTG GCCTTGGAAG 
    GGACTCATTT CTTCTGGACT GTGTAAGTAA TATCATGAGA CATGCACGGC 
    AGGCAAATAT TCCAACAGTC GTTGACGGGG ATGGCCTTTT CCTTATAACC 
    AATAACCTTA GTCTTGTTGA GGGTAACTTG CTTGCCATCC TAACACCAAA 
    TGTATACGAG TACAAACGTC TTGTCCAGAA GGTTCTTAAC TGTGAAGTAA 
    ATGAGGAAAA CGCTTCTGAA CAACTTACTG CACTATGCCA AAAAAATCGG 
    TGGCATAACC ATCATGCGGA AAGGAAAAGC AGATATAATC AGTGATGGCA 
    AAACTGTAAC ACAAGTAAGT ACCTTTGGTT CCCCAAGGAG ATGTGGTGGT 
    CAAGGTGACA TTCTTTCAGG AAGTGTTGCA GTATTTGCAT CATGGGCACG 
    TCACTTTCTC CTGACGAATG AGTACCCTAC AGAGAAGAGC GTGAATCCGA 
    TGATGCTTGG GTGCATTGCT GGCTCTCTAC TACTTAGGAA AGCTGCATCA 
    CATGCTTTTG AGAAGAACAA GAGATCAACT GTCACCACTG ACATCATTGA 
    GTTACTGGGC AAAAGCTTAG AAGATATATG CCCTGCTGGT CATTAGTTTA 
    GATCTTTACC ATCATTGGTG GTACGGCGCC TTAGCACCTG TAATAATGGT 
    AATCCATATG TTCGGATACC AGTCTCTCCC TGCTTAATGT ACATGTTTCT 
    TGACTGAAAA GATGGTGTTA CAATGCTTGG TTTTGTTTAG CCTCCGTTTT 
    GCTCAGAAGA ATTCTACAGA ATGAATAATG AATTGCCCCA TAAATGGGGC 
    TTTGATTTTG G

    Gene models with high sequence identity

    1. AT5G19150.2 [+] show detail - pfkB-like carbohydrate kinase family protein
      E-value: 4e-123; Score: 158.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Uncharacterised protein family, carbohydrate kinase-related 0.000000000019
    HMMPfam Uncharacterised protein family, carbohydrate kinase-related 1.7e-35
    HMMPanther UNCHARACTERIZED 1e-50
    HMMPanther UNCHARACTERIZED 0.000000038
    Gene3D no description 1.5e-27
    superfamily Ribokinase-like 0.00000000012
    superfamily Ribokinase-like 2.5e-37
    ProfileScan Uncharacterised protein family, carbohydrate kinase-related 23.607
    ProfileScan Uncharacterised protein family, carbohydrate kinase-related 54.372

    See the detailed result >

    AT5G19150.2

    Model type
    Protein coding
    Short Description
    pfkB-like carbohydrate kinase family protein
    Computational Description
    pfkB-like carbohydrate kinase family protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family, carbohydrate kinase-related (InterPro:IPR000631); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR