K03751

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K03751

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K03751

Determination of introduced cDNA(s)

  • J033095E15 - Rice Full-length cDNAs - Original: J033095E15

    full reading [+] show sequence

    Nucleotide sequence: J033095E15 - full reading 
    GATCACGTAC TAATTAAGCC ATCGTATCAT ATCAGCCATG GCGCGCCACC 
    AGCTATGTCT CTTGACGACG ACGATGCTAG TAGCCGTCGT CGTCTTCCTC 
    CCGTGCCTCG CCACCGCCAC CGGAAAGACC GGCCAGATCG CCGTCTTCTG 
    GGGCCGCAAC AAGACGGAGG GCTCACTGAA GGAGGCCTGC GACACCGGCC 
    TCTACACCAC CGTCATCATC TCCTTCTTCA GCGTCTTCGG CCACGGCCGC 
    TACTGGACCG ACCTCTCCGG CCACGATGTC TCCCGAGTCG GCGCCGACGT 
    CAAGCACTGC CAGTCCAAGA ACATCCCCGT CCTCCTCTCC GTCGGCGGCG 
    ACGGCTACCA GTACTCGCTC CCCACCGCCA ATTCGGCCAA GGACGTCGCG 
    GACCACCTCT GGCACGCCTA CCTCGGCGGC GGCCGCAGGG GCGTGTTCCG 
    CCCCTTCGGC GACGCCGTGC TCGACGGCGT CGACCTCTAC ATCGACCACG 
    GCGGGCCGGC GAACTACGAC GTGCTGGTCC GGCGCCTCGC CGGCTACCGC 
    GGCAAGCCGG TGCTGCTGAC GGCGACGCCG AGGTGCGTGT ACCCGGACGC 
    GAACGCGGGC GGCGCTGGGG ACGGGGCTGG TGCGGCGCAT CCACCCGCGG 
    TTCTACGGCG ACGCGGCGTG CACGAACAAG ACCGACGGCG AGGGGCGGAG 
    GAGCCTGTTC GACTGGGAGG ACTGGGACGC GTGGACGTCG CGGTTCCCGG 
    CGAGCCAGGT GTACGTGGGG CTTCCGGCGG AGGAGACGGC GGCGGACTGG 
    ATAAACCCGG AGTCGCTCTA CTACGCCGTG ATGCAGAGGG CGCAGACAGC 
    GAGCAACTAC GGCGGCGCCA TGCTGTGGGA CCGAGGCGCC GACAAAGCCT 
    ACGATAACTA CTACGGCAGG GCGCTCAAGG ACTTCGTTTG ATCGATTCTC 
    ACATTCAATC CGGCCGCCAT TGCTGCTTCA TCGGAGCTTC AATTCGATCA 
    ACTTCTTCTT CCCAATAGTA TATGCATGAT TGTGTATAAT AATGGAGCCA 
    GCTTTGAATT TGTTTGCGTA GCGTGTGTAC GTGTGCGCGT ATGTAATTTG 
    TGAGTGTCTC TCAGGGTGCT GTATGCTTGA ATTAAGGTAC ATGAACAATA 
    AATTCAAGTA TGCACT

    Gene models with high sequence identity

    1. AT5G24090.1 [+] show detail - chitinase A
      E-value: 5e-33; Score: 47.40

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D Glycoside hydrolase, subgroup, catalytic core 5e-59
    Gene3D Glycoside hydrolase, subgroup, catalytic core 5.1e-18
    superfamily Glycoside hydrolase, catalytic core 1.5e-48
    superfamily Glycoside hydrolase, catalytic core 1.1e-14
    HMMPfam Glycoside hydrolase, family 18, catalytic domain 6.5e-12

    See the detailed result >

    AT5G24090.1

    Model type
    Protein coding
    Short Description
    chitinase A
    Curator Summary
    Chitinase A (class III) expressed exclusively under environmental stress conditions.
    Computational Description
    chitinase A (CHIA); FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: response to salt stress, response to cold, cellular response to water deprivation, response to wounding, response to light intensity; LOCATED IN: endomembrane system; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, chitinase active site (InterPro:IPR001579), Glycoside hydrolase, family 18, catalytic domain (InterPro:IPR001223), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR