K03751

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K03751

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K03751

Determination of introduced cDNA(s)

  • J033095E15 - Rice Full-length cDNAs - Original: J033095E15

    full reading [+] show sequence

    Nucleotide sequence: J033095E15 - full reading
    GATCACGTAC TAATTAAGCC ATCGTATCAT ATCAGCCATG GCGCGCCACC 
    AGCTATGTCT CTTGACGACG ACGATGCTAG TAGCCGTCGT CGTCTTCCTC
    CCGTGCCTCG CCACCGCCAC CGGAAAGACC GGCCAGATCG CCGTCTTCTG
    GGGCCGCAAC AAGACGGAGG GCTCACTGAA GGAGGCCTGC GACACCGGCC
    TCTACACCAC CGTCATCATC TCCTTCTTCA GCGTCTTCGG CCACGGCCGC
    TACTGGACCG ACCTCTCCGG CCACGATGTC TCCCGAGTCG GCGCCGACGT
    CAAGCACTGC CAGTCCAAGA ACATCCCCGT CCTCCTCTCC GTCGGCGGCG
    ACGGCTACCA GTACTCGCTC CCCACCGCCA ATTCGGCCAA GGACGTCGCG
    GACCACCTCT GGCACGCCTA CCTCGGCGGC GGCCGCAGGG GCGTGTTCCG
    CCCCTTCGGC GACGCCGTGC TCGACGGCGT CGACCTCTAC ATCGACCACG
    GCGGGCCGGC GAACTACGAC GTGCTGGTCC GGCGCCTCGC CGGCTACCGC
    GGCAAGCCGG TGCTGCTGAC GGCGACGCCG AGGTGCGTGT ACCCGGACGC
    GAACGCGGGC GGCGCTGGGG ACGGGGCTGG TGCGGCGCAT CCACCCGCGG
    TTCTACGGCG ACGCGGCGTG CACGAACAAG ACCGACGGCG AGGGGCGGAG
    GAGCCTGTTC GACTGGGAGG ACTGGGACGC GTGGACGTCG CGGTTCCCGG
    CGAGCCAGGT GTACGTGGGG CTTCCGGCGG AGGAGACGGC GGCGGACTGG
    ATAAACCCGG AGTCGCTCTA CTACGCCGTG ATGCAGAGGG CGCAGACAGC
    GAGCAACTAC GGCGGCGCCA TGCTGTGGGA CCGAGGCGCC GACAAAGCCT
    ACGATAACTA CTACGGCAGG GCGCTCAAGG ACTTCGTTTG ATCGATTCTC
    ACATTCAATC CGGCCGCCAT TGCTGCTTCA TCGGAGCTTC AATTCGATCA
    ACTTCTTCTT CCCAATAGTA TATGCATGAT TGTGTATAAT AATGGAGCCA
    GCTTTGAATT TGTTTGCGTA GCGTGTGTAC GTGTGCGCGT ATGTAATTTG
    TGAGTGTCTC TCAGGGTGCT GTATGCTTGA ATTAAGGTAC ATGAACAATA
    AATTCAAGTA TGCACT

    Gene models with high sequence identity

    1. AT5G24090.1 [+] show detail - chitinase A
      E-value: 5e-33; Score: 47.40

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D Glycoside hydrolase, subgroup, catalytic core 5e-59
    Gene3D Glycoside hydrolase, subgroup, catalytic core 5.1e-18
    superfamily Glycoside hydrolase, catalytic core 1.5e-48
    superfamily Glycoside hydrolase, catalytic core 0.000000000000011
    HMMPfam Glycoside hydrolase, family 18, catalytic domain 0.0000000000065

    See the detailed result >

    AT5G24090.1

    Model type
    Protein coding
    Short Description
    chitinase A
    Curator Summary
    Chitinase A (class III) expressed exclusively under environmental stress conditions.
    Computational Description
    chitinase A (CHIA); FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: response to salt stress, response to cold, cellular response to water deprivation, response to wounding, response to light intensity; LOCATED IN: endomembrane system; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, chitinase active site (InterPro:IPR001579), Glycoside hydrolase, family 18, catalytic domain (InterPro:IPR001223), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR