K03813

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K03813

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K03813

Determination of introduced cDNA(s)

  • J023013F19 - Rice Full-length cDNAs - Original: J023013F19

    full reading [+] show sequence

    Nucleotide sequence: J023013F19 - full reading
    CCCTGGAGGC TGCAGCTCCT GGCCTCCCGG GCAACTAGGG TTCGGCAAAT 
    CCCCCGCAAG GAGGGTGAAA CCCTTCCCCA AAACTCCCCA ATCCCCACCC
    GACCTTCTTC GAAATCGGAG GCAAAACCCT AATCGCAAAC AGCTCGTCCT
    CGCGCGGCCG CCGCTCCGCA GCAATGGCGT CCCTCTTCAA GGACCCGACC
    AAGCTGTCCG CGTACGGGGA CAGGCGGTTC ACCGGGACGC AGGAGGAGTA
    CGAGGCGGCG CTGCAGGCGT CGGTGACGGT GTACGTCGGG AACATGTCCT
    TCTACACCAC GGAGGAGCAG GCCTATGAGC TCTTCTCCCG CGCCGGCGAG
    ATCAGGAAGA TCATCATGGG ACTCGACAAG AACTCCAAGA CCCCCTGCGG
    CTTCTGCTTC ATACTGTACT ACTCCAGGGA GGATGCTGAA GATGCGGTCA
    AATATATTAG TGGAACAATG CTTGATGATC GCCCAATTCG TGTTGATTTT
    GATTGGGGCT TTGAAGAAGG CAGACAATGG GGTCGTGGAC GGAGTGGTGG
    ACAAGTAAGG GATGAGTACC GCACGGACTA CGATCCTGGA AGAGGTGGCT
    ATGGTAAGAT GGTTCAGAAA GAGCTAGAAG CACAACGTGA GTTAGTTGAC
    TATGGAGGTG CTTTTCAACC TAATGCACCA CCTCAATATG ACAGAGGTGA
    CAGGAAGAGA GGGTATGGAG ATTCTTACCG GAACGACAGA GATTACCAAC
    GGAAACGTTA CCGGAACGAT GAGCGATCGT CGCAAAGAGC ACCTGACTCT
    GAGTTCAAGA GAGATGCGAT TGATTCGGAG AAGAATCCTA GGTTTCGTGA
    GAAAGGTGAT TCTGATGAAG AAGACGATGA TTATGATAAG AGACGCCGGC
    GCTGAACTGA AAGAAACAAT TGCTGATAAA TGCAAATGGG CAGTTGCAGT
    GACTACACTA GTAAAGCCCG TCGAGCTTAT GTTTTTTACC CTGTTGTGTA
    CCATATGACT TATATATCTG TCGTCAGCTC ATTTCTATGT TGCGGTTCAT
    CACCACATGC TTGCATAGGT CTCGCATGCG ACTGGGAATG GATTTTGTGT
    TTATTGACAC TTCAGCTTAT GTATTGACCT GTTATTTAGG TTGGCAACTA
    ATTGATTTTG GTCGGTAACA ATTACCTTGC GAACT

    Gene models with high sequence identity

    1. AT5G44200.2 [+] show detail - CAP-binding protein 20
      E-value: 6e-79; Score: 291.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMSmart RNA recognition motif, RNP-1 1.1e-21
    ProfileScan RNA recognition motif, RNP-1 15.494
    superfamily RNA-binding domain, RBD 1.3e-30
    HMMPanther 20 KD NUCLEAR CAP BINDING PROTEIN 1.7e-86
    HMMPfam RNA recognition motif, RNP-1 0.00000000000048
    Gene3D Nucleotide-binding, alpha-beta plait 7e-35

    See the detailed result >

    AT5G44200.2

    Model type
    Protein coding
    Short Description
    CAP-binding protein 20
    Curator Summary
    Encodes a nuclear cap-binding protein that forms a heterodimeric complex with ABH1 (ATCBP80) and is likely to participate in RNA metabolism. Its mRNA is ubiquitously expressed.Loss of function mutations suggest a role in processing of pri-miRNA and mRNA splicing.
    Computational Description
    CAP-binding protein 20 (CBP20); FUNCTIONS IN: RNA binding, RNA cap binding; INVOLVED IN: RNA metabolic process, RNA splicing, via endonucleolytic cleavage and ligation, primary microRNA processing; LOCATED IN: mRNA cap binding complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT3G46020.1); Has 9575 Blast hits to 9549 proteins in 2190 species: Archae - 96; Bacteria - 7682; Metazoa - 239; Fungi - 361; Plants - 280; Viruses - 2; Other Eukaryotes - 915 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR