K03817

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K03817

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
cauline leaf (PO:0000013)
  • hyponastic (PATO:0002329)
    (Cauline leaf::Shape::hyponastic)
  • abnormal (PATO:0000460)
    (Cauline leaf::Others)
rosette leaf (PO:0000014)
  • increased size (PATO:0000586)
    (Rosette leaf::Shape::large)
  • present in greater numbers in organism (PATO:0000470)
    (Rosette leaf::Number::many)
fruit (PO:0009001)
  • abnormal (PATO:0000460)
    (Silique::Others)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Others)
stem internode (PO:0020142)
  • decreased length (PATO:0000574)
    (Stem::Shape::short internode)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K03817

Determination of introduced cDNA(s)

  • J033040A20 - Rice Full-length cDNAs - Original: J033040A20

    full reading [+] show sequence

    Nucleotide sequence: J033040A20 - full reading 
    GACTCGCCGT CACCCCCCAC CTTGACCTCC GCTTCGAATT CGAATTCGAA 
    TCCGATGGAT TCGATTCGCC GTCGATCTGC CGGAGGCATC CTCGGCATCC 
    TCTTTCTGGT GCTGCTCCGG TGGGCGGGGG CGGGGGATCC CTATGCCTAC 
    TACGAGTGGG AGGTATCGTA CGTGTGGGGT GCGCCGCTGG GCGGAGTGAA 
    GAAGCAGGAG GCGATTGGCA TCAACGGGCA GCTGCCGGGG CCGGCGCTGA 
    ACGTGACGAC CAACTGGAAC CTGGTGGTGA ACGTGAGGAA CGGCCTGGAC 
    GAGCCGCTGC TGCTGACGTG GCACGGGGTG CAGCAGCGCA AGAGCCCCTG 
    GCAGGACGGC GTGGGCGGCA CAAACTGCGG CATCCCGCCG GGGTGGAACT 
    GGACGTACCA GTTCCAGGTG AAGGACCAGG TCGGCAGCTT CTTCTACGCC 
    CCCTCCACCG CCCTCCACCG CGCCGCCGGC GGCTACGGCG CCATCACCAT 
    CAACAACCGC GACGTCATCC CCTTGCCCTT CCCCCTCCCC GACGGCGGCG 
    ACATCACCCT CTTCCTCGCC GACTGGTACG CCAGGGACCA CAGGGCCCTG 
    CGCCGCGCCC TCGACGCCGG CGACCCCCTC GGCCCCCCCG ACGGGGTGCT 
    CATCAACGCC CTCGGCCCCT ACCGCTACAA CGACACCCTC GTCCCGCCGG 
    GCGTCACCTA CGAGCGCATC AATGTCGACC CGGGGAGGAC CTACCGCCTG 
    CGCGTCCACA ACGTCGGCGT CGCCACCAGC CTCAATTTCA GAATCCAGGG 
    CCACAACCTG CTGCTCGTCG AGGCCGAGGG CTCCTACACT TCACAGCAGA 
    ACTACACCAA CATGGACATC CATGTCGGCC AGTCCTACTC CTTCCTTCTC 
    ACCATGGACC AGAACGCCTC CACCGACTAC TACGTCGTCG CCAGCGCCCG 
    TTTCGTCCCC GACGCCGACA AGCTCACCGG CGTCGCCATC CTCCACTACT 
    CCAACTCCCA GGGCCCGCCC TCTGGCTCTC TCCCTGATGC CCCAGATGAC 
    CAGTACGACA CCGCTTTCTC CATCAACCAA GCAAGATCAA TCAGATGGAA 
    TGTTACAGCC AGTGGTGCCC GCCCCAATCC GCAGGGCTCA TTCCATTACG 
    GCGACATTAC CGTCACCGAT GTGTACCTGC TGCAGAGCAT GCCACCGGAG 
    CTCATAGACG GCCAGATGCG TGCTACTCTC AATGGAATTT CTTATATTGC 
    TCCATCGACT CCTTTGATGC TCGCTCAGCT CTTTAATGTC CCGGGAGTCT 
    ACAAACTGGA TTTTCCTAAT CGTCCTATGA ACAGGTTACC AAAGCTTGAC 
    ACCTCCATTA TCAATGGCAC CTACAAAGGC TTTATGGAGA TCATATTCCA 
    AAACAACGCC ACATCCGTGC AGAGCTACCA CTTGGATGGA TATGCATTCT 
    TTGTTGTTGG GATGGACTAT GGACTGTGGA CAGACAACAG CCGCGGTACA 
    TACAACAAAT GGGATGGCGT TGCACGCTCC ACAATTCAGG TATTCCCTGG 
    CGCTTGGACG GCTGTCCTTG TCTTTCTTGA CAATGCGGGT ATATGGAATC 
    TGCGGGTGGA GAACCTGGAC GCCTGGTACC TGGGGCAAGA AGTGTACATC 
    AGTGTGGTTA ACCCGGAGGA TAGCAGCAAC AAGACCGTGC TTCCTCTTCC 
    CGACAACGCG ATTTTCTGTG GTGCGCTGTC AAGTTTACAA AAGGAGCAAT 
    CGCATAGATT CCAATACTCA GAAGCTTCTC AGATAACGCA GCTGTGGAAG 
    ATGGTTTTCT TCATGGCATG GTTGGCCCTT TGGTAGAGCT TAATTAGATC 
    TGTCTGCTGG GGTGATCCGG AGACGAGAGA GCTCAGAGCT GGTCCCAAAC 
    ATGGATGAGC TCTCAGCTCA AGTTAGTAGG GTGGTGAATT TTGTCAGATT 
    CGAATTGGTT AGATTGGACT TGAGTGATGA TCCTGTCTGG GAAGGGCAAA 
    GAGTAGGAGG AAGCATTGGG AAGGCATACA CACGCTTGAC TTGATTTGGC 
    TTGAAGTCGA GCTAGCAGGT TGCTCATTAG CCGTTGTGTG ATATCTGAAG 
    ATCAACTTAC TACCCAAACC TAGACTCACA GAAACCAATT GATTGATATG 
    GATTAAGACC TG

    Gene models with high sequence identity

    1. AT5G48450.1 [+] show detail - SKU5 similar 3
      E-value: 0; Score: 728.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Multicopper oxidase, type 1 5.7e-38
    HMMPfam Multicopper oxidase, type 3 4.1e-36
    HMMPfam Multicopper oxidase, type 2 1e-25
    Gene3D Cupredoxin 2e-34
    Gene3D Cupredoxin 5.2e-42
    Gene3D Cupredoxin 1.1e-48
    HMMPanther PECTINESTERASE 1.8e-282
    HMMPanther MULTI-COPPER OXIDASE 1.8e-282
    superfamily Cupredoxin 7.5e-45
    superfamily Cupredoxin 1.3e-34
    superfamily Cupredoxin 3.9e-31

    See the detailed result >

    AT5G48450.1

    Model type
    Protein coding
    Short Description
    SKU5 similar 3
    Curator Summary
    Encodes a protein with two DUF26 domains and a signal peptide for secretion. The protein is transported to the apoplast when it is expressed as a GFP fusion protein.
    Computational Description
    SKU5 similar 3 (sks3); FUNCTIONS IN: oxidoreductase activity, copper ion binding; INVOLVED IN: oxidation reduction; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Multicopper oxidase, type 2 (InterPro:IPR011706), Multicopper oxidase, type 3 (InterPro:IPR011707), Cupredoxin (InterPro:IPR008972), Multicopper oxidase, type 1 (InterPro:IPR001117); BEST Arabidopsis thaliana protein match is: Cupredoxin superfamily protein (TAIR:AT4G12420.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR