K03918

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K03918

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K03918

Determination of introduced cDNA(s)

  • J013102E23 - Rice Full-length cDNAs - Original: J013102E23

    full reading [+] show sequence

    Nucleotide sequence: J013102E23 - full reading 
    GCTTCTCTTC TCTTCTCTCT CTCAGTCTCA CTCTCCCAAT CCGCCTCGGC 
    CCGAGCGCGC GCGCGCTTTC CCCCCCTCGC CGCCGGCGAC GAGCTCGAGG 
    CGGCGGTGCG CTCGCCTACC TCCGGAGGGC GGAGCGGGGG GATGGAGCCC 
    ATGAGCGTGG ACGGCGGCGG GGGATGCGGC GGCCTGGACA CGCAGATCGA 
    GCAGCTGATG CAGTGTCGCC CGCTCGCCGA GCAGGAGGTT AAAGCACTGT 
    GCGAGAAGGC CAAGGAGATA TTGATGGAGG AAAGCAATGT TCAGCCTGTC 
    AAAAGCCCAG TAACGATTTG TGGTGATATT CACGGACAAT TCCATGATCT 
    TGTAGAACTT TTTCGGATCG GTGGGAAGTG CCCAGATACT AATTATTTAT 
    TTATGGGGGA TTATGTGGAT CGTGGCTATT ACTCTGTTGA GACTGTTACT 
    CTTTTGGTAG CGCTGAAGGT GCGTCACCCA CATCGGATTA CAATCCTTCG 
    CGGAAATCAC GAGAGCCGGC AGATCACACA GGTTTATGGA TTCTACGACG 
    AATGTTTACG AAAGTATGGC AATGCAAATG TATGGAAGAT ATTCACGGAT 
    TTATTTGACT ATTTTCCACT GACAGCACTG GTGGAATCTG AAATTTTCTG 
    CCTGCATGGT GGTTTATCTC CATCAATTGA GAACCTTGAT AGTGTGCGTA 
    GCTTAGATCG TGTCCAAGAG GTTCCGCATG AGGGACCAAT GTGTGATCTT 
    CTATGGTCTG ATCCAGATGA CCGCTGTGGT TGGGGCATAT CTCCTCGTGG 
    TGCTGGCTAC ACTTTTGGGC AGGATATATC CGAGCAATTC AATCACACCA 
    ACAATCTCAA ACTTGTAGCT CGGGCTCATC AACTAGTTAT GGAAGGATAT 
    AATTGGGCTC ATGAACAAAA AGTTGTTACT ATATTCAGTG CTCCAAATTA 
    TTGTTACCGA TGTGGGAATA TGGCATCCAT TTTGGAAGTT GATGACTGCA 
    ACAGCCATAC TTTTATTCAG TTCGAACCAG CTCCTAGGAG AGGTGAGCCT 
    GACGTGACAC GGAGGACGCC CGATTATTTC CTTTGAGTTA ATGGTGCTAC 
    CATTTGTCAC CTTGTACTGC GAATTTGCGA TAGTCAAATG CTGGTCAGTG 
    ATACTTTGCT GGACTGTGAA ACCTGCGCAT AGGCCAACCA ACAATAACAA 
    GGGAACATCA GATCCCTTCG TAAAACTTGA CCCTCCATTG GTCAATGCAA 
    GAGATGCTGC TATCCTGAAA CAAAGTGTCA TGCTCATGCA GCGATGCCTG 
    AGTTTTTCAG GTGATAAAAA AGGCCCATCC ATCCTCACCC TCTCCTTTTT 
    AGGCATTTTT ACAGAGGAAA TCTAGTGGCA AGACTGAACT TCTATTTGTA 
    TTTTGTAGCG TAAGCTTGTA TCGATAGTCT TGTAATTTGT ATCATCAATG 
    GCAAGGCAAC CTAATC

    Gene models with high sequence identity

    1. AT3G58500.1 [+] show detail - protein phosphatase 2A-4
      E-value: 3e-172; Score: 602.00

     

    InterPro Scan Digest

    Program Description E-value
    FPrintScan Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase 8.1e-91
    FPrintScan Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase 8.1e-91
    FPrintScan Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase 8.1e-91
    FPrintScan Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase 8.1e-91
    FPrintScan Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase 8.1e-91
    FPrintScan Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase 8.1e-91
    FPrintScan Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase 8.1e-91
    PatternScan Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase 0
    HMMPanther SERINE/THREONINE PROTEIN PHOSPHATASE PP2A 8.8e-263
    HMMPanther Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase 8.8e-263
    HMMSmart Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase 7e-162
    Gene3D no description 7.8e-125
    HMMPfam Metallophosphoesterase 1.4e-40
    superfamily Metallo-dependent phosphatases 3.6e-126

    See the detailed result >

    AT3G58500.1

    Model type
    Protein coding
    Short Description
    protein phosphatase 2A-4
    Curator Summary
    Encodes one of the isoforms of the catalytic subunit of protein phosphatase 2A: AT1G59830/PP2A-1, AT1G10430/PP2A-2, At2g42500/PP2A-3, At3g58500/PP2A-4 [Plant Molecular Biology (1993) 21:475-485 and (1994) 26:523-528; Note that in more recent publications, there is mixed use of gene names for PP2A-3 and PP2A-4 - some refer to At2g42500 as PP2A-3 and some as PP2A-4].
    Computational Description
    protein phosphatase 2A-4 (PP2A-4); CONTAINS InterPro DOMAIN/s: Metallophosphoesterase (InterPro:IPR004843), Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase (InterPro:IPR006186); BEST Arabidopsis thaliana protein match is: protein phosphatase 2A-3 (TAIR:AT2G42500.1); Has 6816 Blast hits to 6628 proteins in 481 species: Archae - 80; Bacteria - 203; Metazoa - 2402; Fungi - 1409; Plants - 984; Viruses - 3; Other Eukaryotes - 1735 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR