K03926

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K03926

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)
  • present in fewer numbers in organism (PATO:0001997)
    (Rosette leaf::Number::few)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
sporophyte vegetative stage (PO:0007134)
  • decreased speed (PATO:0000304)
    (Adult plant::Growth::slow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K03926

Determination of introduced cDNA(s)

  • J033082P03 - Rice Full-length cDNAs - Original: J033082P03

    full reading [+] show sequence

    Nucleotide sequence: J033082P03 - full reading 
    GGGAGCCGAG CAGCGCATCA TCTCCATCCC GCCTCAACTC CGCCGCTCGA 
    TCGCCTCCAC CCGCCGCCGT TCCGTCTACC TCTCCGACCC CCGGCGGGCG 
    CCGCCGCCGC CGCCGCGCCT ACCATGGCTA ATACGCTGCG ATTGTATCTC 
    ACTTGCATAA GGAACACTCT GGAGGCTGCC ATGTGCCTGC AGAATTTCCC 
    TTGCCAAGAG GTCGAGAGGC ACAACAAACC GGAGGTGGAG CTAAAGACTA 
    GCCCTGAACT TCTGCTGAAC CCAGTGCTCA TTTGCCGTAA TGAAGCAGAA 
    AAGTGTTTGA TAGAGACTTC AATCAACTCT ATTCGTATTA GCATGAAGGT 
    CAAACAGGCA GATGAGCTAG AAAATATTCT TGCAAAGAAG TTTCTTAGGT 
    TTTTATCAAT GAGAGCAGAA GCATTCCAAG TGCTGAGGAG AAAACCAGTT 
    CAGGGTTATG ATATCAGTTT CCTGATAACA AACTACCACT GTGAGGACAT 
    GCACAAGCAT AAGCTCATAG ATTTCATTGT TCAGTTTATG GAGGACATCG 
    ACAAGGAGAT CAGTGAGCTA AAGCTTTCGG TAAATACACG TGGTCGGTTA 
    GTGGCAACTG AATTCCTGAA ACAGTTCATA TGACACATTC TTGGCGATCT 
    TTGGAAAACA TAAAACCCTA GCATTGTTAG CTATGCTGTC TTGGCCTTTG 
    GCGAGCAAAT CTGGAAGGAT CTTTCCACCA CTTTGTTTTC CTTTTGTAAA 
    TGCGTTGACA AGGATATGTG AATTCTTGAT CCAACTAGAC CTCATTGGCA 
    GCTAAAATCT GCCCAGGCAA GAGAGATGAG GGGAAACAAA GTCATGGTCA 
    GTAGGTTGAG ATAGATTTTT TGGCCTTTTG GTTCAAGAAT CCTGTACTGT 
    GCCGGCCAAG TTTTATTGGA ATGTGGAATG TCAAAATTGG GGCTGATTCT 
    GATTCTGATA TGTCAAAATT GGAATGTGAA AATCAGAGAC GCTTGTTGTC 
    TCTGATTCTG ATTTC

    Gene models with high sequence identity

    1. AT4G14147.1 [+] show detail - protein binding
      E-value: 3e-85; Score: 311.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D no description 3.9e-76
    HMMPanther ARP23 complex 20kDa subunit 7e-115
    HMMPfam ARP23 complex 20kDa subunit 2.9e-80
    superfamily Arp2/3 complex subunits 2.5e-77

    See the detailed result >

    AT4G14147.1

    Model type
    Protein coding
    Short Description
    protein binding
    Curator Summary
    actin-related protein 2/3 complex 34kDa subunit family / arp2/3 complex 34kDa subunit family
    Computational Description
    ARPC4; CONTAINS InterPro DOMAIN/s: ARP23 complex 20kDa subunit (InterPro:IPR008384); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR