K03930

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K03930

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
rosette leaf (PO:0000014)
  • upturned (PATO:0002031)
    (Rosette leaf::Shape::hyponastic)
  • present in greater numbers in organism (PATO:0000470)
    (Rosette leaf::Number::many)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K03930

Determination of introduced cDNA(s)

  • J033005K23 - Rice Full-length cDNAs - Original: J033005K23

    full reading [+] show sequence

    Nucleotide sequence: J033005K23 - full reading 
    GGGTTGCCAA ATCTGCCATG TCGCCGCCAT GGATCCCCTA ATCGAGGACC 
    CCCCCAACCT AGCGGAGACG AAGAAGAACG AGAAGGGAAG CCCACCGCGT 
    CGCCATCATT AACTCCTCCT CTCCTCTCGT CTCCCTCGAA AGCACCACCG 
    GATCCGACGA CCCCCTCCTC CCCTTTCTCC CCTCCTCACG AAACCGCCTC 
    GCCTTCCTCT TCTTTTCTTT TTCGCTCGCT TCGCATCGCT CACATGCCCC 
    TGCCTGCCGC CGCAGACGGG GCGCCATGTC GCGTAGCGGG GTGGAGGTGG 
    TCGTGAGCAG GGGTTGCTCC AGGCTCGTCC TCCCCGGGAT GCAGCCTTCC 
    TCCGCCTCCG CCGCTTCCTC CTCCTCCTTC TCGCGCGGCG GACATGGCGG 
    CGGCGGCGAC CGGAGGCCGC TGCCCGATGG CCCCTTCGCC GGATTGGTCA 
    TCTGCGTCAC CGGGCTATCC AAAGAGGCGA GGACTCAGGT GAAGGAGGCG 
    ACTGAGAGGA TGGGAGGCGA GTACAGCGGG AGCCTGCATC CCAAGTGCAC 
    CCACCTAGTG GTTCAGAGCT TCGCCGGCCG CAAGTTTGAG CACGCGGTCA 
    AGCATGGCGC GAAGAATGGC CTCTTTGTTG TAACACTTGG TTGGCTTGTG 
    GATTGCGTGC GGAGGAGCAT GAGGTTGGAT GAATCGTTAT ATAGCATCAA 
    GAACATTGGG GAGAATGGAA TGCCACTCGG GGAGTTCAAC CGGCTTGTCG 
    GCGCTCCTGT TAGTGGGAAT TCTTGCCTTC CACCGATGAT GTTTCAGGAA 
    AAAACATTTT CAGACACGAC CGAAAAGCAT CGGCTTCAGA CATCTAGAAA 
    AGAACATGAC CATGATGAAT TTCTCTTTAC AAACGACTCG ATCTACATTG 
    ACCCTGGGAT ATCTGGTGAA ATGAGGAAGA AGGTATCTGA TGCTGCTACT 
    AGAGAAGGTG CAAAATTGTT GGACCACTGG TTTATTGGCT GTCATGCGAC 
    ATATGTTGTG TGTGAGGACG CTTCTGTCAA GAGATATGTT GGTCATTCAG 
    ACAACATTGT AACTCCACTT TGGATATTGA AAACCGCAAA GGAAAAAGGT 
    TTGCAGCGTC TTGTCCATTT GTCTTCGGAC CTGGCTAGGC AGGTTGCCAC 
    GATTCTTGAA AATGCCCAGA CATTTCAAGA GAATAGAAAA ATTGGGGATG 
    TTCCTTCTGT CAATTCAAAC TCCAGTGGAG TACCATCAAC CCAAGGGGAG 
    ATAGATGAAA TTCATCAAGA GAGGCAAAAA TTTGTTGAAG TAGCAAAGAA 
    AAATGTCCGA GATCGCCGTG CTCGCCGTAT GCAGTCATGT GAAGTACCAA 
    TCCATCCAAT CACGCCTGTG AAACTTATGG AATCAATCTG TTGGACCGTA 
    TCTGAGCCAA CTACGTCCGC ATGCATTTAT ACGGAGTTTT CATGGTCAGA 
    CGATGCCTTT GAGCAACAAA GCACTACTTT CTTCGATGCG AATGGGGATG 
    GCAAGGATGA TCAGTCAAGC GATAGTTTCA CCCGCCCACT AAGAGAAAGT 
    GAGAAGAGTG AAGTGATCTT TAAGAACCAC TTCCTTACCG TACTCTTCCC 
    CATTGATCGT TTTGGTGAGC TTGGACCTTC CTCAAGGACA TTCTTCAGCA 
    ATGGTGGTTT CACACGCATA CAAGTGCTTG ATCACATCTA CAACTTCTAC 
    CAGGAAAATA TGTCTTCCGA TGAGATAAAT GTAGCCCTGC AAACGGATTC 
    ACGACATGCT GATCGACTTC GCTCGCTGTA CGCAAGTACT GAATCAGCAG 
    AAAGAGGTTT TGTAACATTC AAAAGAATTG ATTTTTTGGG AAGCCGAAGA 
    AGTTTTGAGG GGCTAAAAAC GCCTCAGCAG AGAGAACAAT AGCAATGTAT 
    ATGAGCTTGT GATTAGGGCA TAAACTGCAC CATACTCGGT GTTATTTAGT 
    CAAATTTGTT TGTTGTTTAC AGGTTGATAG TGATGTACTA CCATGTATGC 
    ACGCCGAATA AAATTGTAGG AGATAATGAT ATATTTATAG ATCAATGAAA 
    AAGATCATGT TGGGC

    Gene models with high sequence identity

    1. AT2G26270.1 [+] show detail - FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: en...
      E-value: 2e-109; Score: 32.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily BRCT 2.2e-25
    superfamily BRCT 3.8e-05
    HMMPanther TOPBP1 4.7e-15
    HMMPanther DNA REPLICATION REGULATOR DPB11-RELATED 4.7e-15
    HMMSmart BRCT 3.2e-14
    HMMSmart BRCT 19
    HMMPfam BRCT 9.2e-11
    ProfileScan BRCT 18.987
    ProfileScan BRCT 8.471
    Gene3D no description 5.6e-07

    See the detailed result >

    AT2G26270.1

    Model type
    Protein coding
    Computational Description
    FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: BRCT domain-containing DNA repair protein (TAIR:AT3G43930.1); Has 29 Blast hits to 29 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 29; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR