K03937

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K03937

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
rosette leaf (PO:0000014)
  • increased size (PATO:0000586)
    (Rosette leaf::Shape::large)
  • present in greater numbers in organism (PATO:0000470)
    (Rosette leaf::Number::many)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Original: K03937

Determination of introduced cDNA(s)

  • J023098H16 - Rice Full-length cDNAs - Original: J023098H16

    full reading [+] show sequence

    Nucleotide sequence: J023098H16 - full reading 
    GCTCCGACTC CGCCGGCCCA CTCGCTCACT GCGCCGCCGC TCATCGGCGC 
    GACGCTCCGG CGGCCGGCGC TCGCGGGCTC CGAGCCGGTC GCCGCCTCCC 
    TCTGCTCTCC TCTCCGTCGC CCTCTCCTCC AGGCCGCCCC CTCCGGTGCT 
    CCACCGTCGC CCTCCCTCGC TCCGGCAGCT CACGCTCGGG GGCTGGCCGC 
    CGTCGCCCTC TCCGGCAGGG TTCAGAATTG CATTTGGTAC GATGGAAGAG 
    GGCAGCAACT ATTATCTTGT CAGGAAGGGG GAGATGGTAG CTGTTTACAA 
    ATCTTTAAAT GATTGCCAGG CTCAAATTTG CTCATCGGTA TCTGGTCCTG 
    CTGCAAGTGC CTACAAGGGT AACTCTTGGA GCAGAGAAAA GGAGGAATAC 
    CTCTCTTCGC GTGGGTTAAG TAATGCTACA TATGTAATCA ATGCAGCTGA 
    ACTTAGGGAA GATCTATTTG GTACCCTTAT CCCCTGTACT TTTCAGGAGA 
    TAACTGTTTC TAGTTCAAAT CAATCAGCTC TAAATCATAC AGGTGTCCTT 
    AACAATACAA GATATCAGCC TGGGGCACAA TCCGTGGATC TGAACTACGA 
    TGCCGTGGGA TCTGGTCAAG CCTCAGCTGA GCACTATAGC CAGCGTATTA 
    ACCAAGGCTA CTCTGTTCGG GGACAAGCAT TTAACAGGCT GGAATCAAGA 
    CCTAGTTCTT CCAGCCATTT CTCACCGAAT AATCTTGATC AGAGTGGAAC 
    TGTTGATGCA CAACCTCTCT CGAAACAATA TATGGTATGC TTACTTCACT 
    TCGATGGTGC ATCGAAAGGA AATCCAGGAA AAGCGGGTGC TGGGGCTGTG 
    CTTATGACTG AAGATGGGAG TGATATCTCG ACTTCGCGAG GGTCTTGGTA 
    TTGTTACCAA TAATGTTGCT GAATACCGGG GCCTGATCTT AGGATTGAGA 
    TATGCTATTA GGCATGGTTT CAAGAAAATC ATAGTATATG GCGACTCTCA 
    ACTAGTCTGT TATCAGGTGA AAGGTACATG GCAAACGAAG AACCAGAACA 
    TGATGGAACT GTGCAAGGAA GTGAGAAAGC TCAAAGAAAA CTTCGTCTCA 
    TTTGAGATCA ACCACATTCG ACGGGAATGG AATGCCGAGG CAGATCGCCA 
    AGCAAACATA GCTATTACTC TTTCCAGTGG TGTGGTCTCT GAGGAGCGTG 
    GCGATGGCTA GCCTTCTCCG GCTATAACCC TTCTAGATAA TGGGAGTAAC 
    TAGTATATGT AGTTAACTAA TTAGCAGGTG GAGACCTATA TGATGGGAGT 
    AACTAATATA TGTAGCTAAC TAATTAGCAA CCAGAGACCT GTGTTTTGCA 
    TCTTGCTGCT CTGGCCTCTG GGAGTCCAGC TTGCAGTAAC CTGTTGAAGA 
    TGATCCGTGT GAAGGGTACA CCTCGATGAT GAACACTTGA GTTACCAGGC 
    CTCATTTTGG AGCACTATGT GAGCTCCAGC TAGTTATTCT TGGTGTAAGC 
    TTCACTACTT GGGCCTTCAC ATAGGCGTTG CCCAAGTTAG TAGACTGGCA 
    GCGATG

    Gene models with high sequence identity

    1. AT3G01410.2 [+] show detail - Polynucleotidyl transferase, ribonuclease H-like superfamily protein
      E-value: 1e-57; Score: 121.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D no description 5.2e-08
    HMMPfam Ribonuclease H 6.5e-09
    HMMPanther RETROELEMENT POL POLYPROTEIN-RELATED 5.5e-09
    HMMPanther GAG/POL/ENV POLYPROTEIN 5.5e-09
    superfamily Polynucleotidyl transferase, ribonuclease H fold 4.7e-18
    ProfileScan Ribonuclease H 12.242

    See the detailed result >

    AT3G01410.2

    Model type
    Protein coding
    Short Description
    Polynucleotidyl transferase, ribonuclease H-like superfamily protein
    Computational Description
    Polynucleotidyl transferase, ribonuclease H-like superfamily protein; FUNCTIONS IN: ribonuclease H activity, nuclease activity, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337), Ribonuclease H (InterPro:IPR002156); BEST Arabidopsis thaliana protein match is: RNase H family protein (TAIR:AT1G24090.1); Has 3179 Blast hits to 3179 proteins in 588 species: Archae - 77; Bacteria - 1109; Metazoa - 13; Fungi - 0; Plants - 1505; Viruses - 0; Other Eukaryotes - 475 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR