K03941

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K03941

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
whole plant (PO:0000003)
  • increased height (PATO:0000570)
    (Adult plant::Plant height::tall)
rosette leaf (PO:0000014)
  • present in greater numbers in organism (PATO:0000470)
    (Rosette leaf::Number::many)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Others)
T2 seed (PO:0009010)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K03941

Determination of introduced cDNA(s)

  • J023150F21 - Rice Full-length cDNAs - Original: J023150F21

    full reading [+] show sequence

    Nucleotide sequence: J023150F21 - full reading 
    GCTATGCACT CCCTCCCACC CCCGGCCGCC GCCTCTCTCC CCATCCTCCT 
    CCTCCTCCGC CGCCGCCGCC GTCGGGAAGT ACACCTGTGC TCTGGTTCCG 
    GCGACACCGC GAGCGAGGAG AGGAGAGGTG GGGGTGAGGG AGTGAGGGTG 
    AGGCCGGGGT TGGGCACCAC CAGCAAGCCA GCCAGCCCCC CCGTCCCCTT 
    AGATCCGGGC CGGGCGTTCT CCGGCGATCT CACGGCCATG GCGTCCCGCC 
    GCCTCTTCGC CTCCCTCCTC AGGTCCACCG CGGCGCCGCG CACCCCGTCC 
    ACGCCCGGGT GCCTCTTCAA CCGCGCCGCC GCCGCCGCCT ACTCCTCGTC 
    CGCCCCCTAC AACGGCCAGG GTTTTCCACT TCCTCAGTCT GAAACTGCTT 
    CACGTCTGGG TTTGTTCTCC AGTCCCGGCG ACACACGCCA ACCTTCATAC 
    GGAGACCGTC TAATGCAGTC ACAACAGCTG AGTCAAGACT ACCGTGCTAG 
    GACACAGGCC AATAATGCGC CACGTTTTGG TGACACAATG TCCAGGATAG 
    CTGGTGGCGA GAACTCTTCC TACTTTGGGA CCCCATCACG CATCTTTGAC 
    GAACACAAAC AATCTTTGGT GAAAGGAAAG AGAGATTTTG TCCATGTCTT 
    GCTGAAGAGA AATAAGACCT TTGTGACCGT GACAGACGTT AGGGGGAACA 
    AAAAGACCGG GGCATCCGCT GGTTGTTTGG AGGACAGGAA AGGGCGCTCT 
    CGTCTTTCCA AATATGCTGC TGAAGCAACT GCAGAACATG TCGGGCGTGC 
    TGCCAGGAAG ATGGGTTTAA AATCTGTGGT CATGAAAGTG AAGGGAACTA 
    CATTTTTCAA TAAGAAGAAG AAAGTGATCC TGAGCTTTAG AGAAGGCTTT 
    CGGGGTGAAA GAGTAAGGGA GCAATCTCCT GTGGTGCTCA TCCACGATGT 
    GACCCAACTT CCACACAACG GATGCCGACT CCCCAAACAA CGCCGGGTTT 
    AGGTCTCAGC GAGCTGGAAT CGAACCTGAG TTGAGAGGAG TCGAAGCATT 
    CAAGGTGATC TGGAAGCTCT ATTTAAGCTG TGTGATGTTG GTCTAGTTGA 
    CCTAAGACAG ATATGTATTG TTTCTCTTGG CTCTGCTACT TGAATTGGTT 
    TTGGCATGAC TTATGTTACT CAGTTAGTTA AGTTATCATC AATTTCGCCA 
    CTTCTTTTTA TCAAATTGCA GATAGGAACT GAAACCCCAA CCGTTGTATG 
    GTATGTTATG ACTTATGAGG AACATATATA TGGTTGATTC TCCTTCAATA 
    AATAGCAAAG CCCTCGCCCC TTTTTCTTGA AACAGTTTGC ACTTGCCCAT 
    TTTTTAGCTT GAGGTACTAC TGTACTAGAA TTGCAGCATG GCATTGCTGC 
    GCTAGCCCTT TTATGTTTTA GCAGACATAT GGTACCTCAT GGTGTTTAGA 
    TCAGCTGCTT CATGTTATTT TTTAGTGTTG TGCTGGAGGT AGTAGATATG 
    GGTATTCGCT GTCAATAGAC TTATTACTTC CACTGAGTTG TCCATTGTGT 
    ATGTAGCGGT AAAAGCTGTA AGAAGGGGTG AAATTAGGGA ACCACTGAAC 
    CCATGAGATT TC

    Gene models with high sequence identity

    1. AT1G31817.1 [+] show detail - Ribosomal L18p/L5e family protein
      E-value: 4e-29; Score: 126.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther gb def: Putative 30S ribosomal protein S11 5.1e-38
    HMMPanther Ribosomal protein S11 5.1e-38
    HMMPfam Ribosomal protein S11 3.5e-17
    Gene3D Ribosomal protein S11 3.4e-24
    superfamily Translational machinery components 6.3e-28

    See the detailed result >

    AT1G31817.1

    Model type
    Protein coding
    Short Description
    Ribosomal L18p/L5e family protein
    Computational Description
    NUCLEAR FUSION DEFECTIVE 3 (NFD3); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic small ribosomal subunit, ribosome, intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S11 (InterPro:IPR001971); BEST Arabidopsis thaliana protein match is: ribosomal protein S11 (TAIR:ATCG00750.1); Has 7495 Blast hits to 7495 proteins in 2576 species: Archae - 12; Bacteria - 4865; Metazoa - 67; Fungi - 4; Plants - 661; Viruses - 0; Other Eukaryotes - 1886 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR