K04029

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K04029

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K04029

Determination of introduced cDNA(s)

  • J033117B06 - Rice Full-length cDNAs - Original: J033117B06

    full reading [+] show sequence

    Nucleotide sequence: J033117B06 - full reading
    GAATTCTTTA ATCCCTCCCA CCCAGCGGAC GCGAGACGCC TCTGCTCTGC 
    TCTCTTGCTT GGAGTTTGGA GAGATCGAGA GAAAGGAGAA GGATACAGCT
    TTTGGAGGAA AAACAACGGA TCGAAATCCC TCCCATTAGG GGCTTTGGGA
    TTAAAATAGC GGTAACACAC ACACAAAAGG GATGCTCAGT TGGAATAATA
    GCTGGCATTC AAGTTCAACA GAAAATAGAA CAATGGAGAG GGAAATTGTG
    GCCTCATATG AACCCAAGAA GAATAACGAA ATCAGGATGT TTGAGAGTTC
    AGACGAGATG GCAACAGATC TGGCTGAGTA TATTTCACAA GTTTCAGAAA
    TTTCTATTAA GGAAAGAGGT TACTTTGCTA TTGCCCTGTC TGGAGGGCCT
    CTTATCAGTT TTATGCGGAA ACTTTGTGAA GCACCATACA ACAAAACCCT
    GGATTGGTCT AAATGGTACA TCTTCTGGGC TGATGAACGT GCGGTGGCTA
    AGAACCATGT GGATAGCTAC TATAAATCAA CAAAAGAAGA TTTTCTCTCC
    AAGGTGCCTA TTCTTAATGG TCACGTCTAC TCCATCAATG ACAATGTGAC
    GGTGGAGGAT GCAGCGACGG ACTACGAATT CGTCATCCGT CAGCTGGTCA
    AGATTCGCAC AGTCGGAGTT TCAGAGAGCA ACGACTGCCC CAAGTTTGAT
    CTGATCCTCC TTAGCATCGG CTCTGATGGT CATGTAGCCT CATTGTTCCC
    CAACCATCCT GCACTTGAGC TCAAGGACGA CTGGGTCACC TACATCACCG
    ACTCTCCGGT GCCGCCACCG GAGAGGATCA CCTTCACCCT TCCCGTGATA
    AACTCGGCAT CGAACATCGC CGTAGTGGCC ACCGGAGAAG ACAAGGCAAA
    GGCTGTGTAT TTTGCCATCT CTGACGGTAC AGAGGGTCCT GATGCTCCAT
    CAATTCCTGC AAGAATGGTT CAGCCAACGG ACGGTAAGTT GGTTTGGTTT
    TTGGACAAGG CGAGTGCCTC GTTTCTTGAG GCCAAGACCA AGAACGATGG
    GTATGAGCAT CCAAAGTATT AGCGACTTGG CATTCCCTTT TTGCTGCCTA
    TGAAGAGTTG AGTTGATCAT GTAGTAGTTG ATGGTTTTTG ATGGAAGATG
    CTTTCCTCCA TTACCTTGGT AGTAAGCAGT TCAGGTGCTC GTTTTGAAGG
    TACTTGGATC TGAGAATATG AAAATATCCG TGTCTTTTTG GAGTTGACCA
    TGGCGCATGG GTAATAGAGA TGTAATCTGT ACTTTATTTT GAGAACTCAC
    AGAAGTTACT GAGAGTAGCT AAGTTCAAAT ATTGGCCGAA TATGTTAGC

    Gene models with high sequence identity

    1. AT1G13700.1 [+] show detail - 6-phosphogluconolactonase 1
      E-value: 4e-91; Score: 332.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther 6-phosphogluconolactonase 7.1e-79
    HMMTigr 6-phosphogluconolactonase 7.5e-62
    Gene3D no description 1.5e-55
    superfamily NagB/RpiA/CoA transferase-like 1.4e-64

    See the detailed result >

    AT1G13700.1

    Model type
    Protein coding
    Short Description
    6-phosphogluconolactonase 1
    Computational Description
    6-phosphogluconolactonase 1 (PGL1); FUNCTIONS IN: 6-phosphogluconolactonase activity, catalytic activity; INVOLVED IN: pentose-phosphate shunt, carbohydrate metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: 6-phosphogluconolactonase, DevB-type (InterPro:IPR005900); BEST Arabidopsis thaliana protein match is: NagB/RpiA/CoA transferase-like superfamily protein (TAIR:AT5G24400.1); Has 3744 Blast hits to 3744 proteins in 1410 species: Archae - 0; Bacteria - 2521; Metazoa - 189; Fungi - 243; Plants - 155; Viruses - 0; Other Eukaryotes - 636 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR