K04048

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K04048

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K04048

Determination of introduced cDNA(s)

J013064D20 - Rice Full-length cDNAs - Original: J013064D20

full reading [+] show sequence

TGCTCGCAAA ACTCACCCAA AAGAGCAGCG TCGCCTCTCC TCCTCCTCCC 
TAACCCCTAC GCTTCCAGAA CCTTCTCGAA GCTCCCGCTC CCCCCCCCCT 
TCCGCTCCAA TGGCGAAGGA ACCGATGCGC GTGCTCGTCA CCGGCGCCGC 
AGGACAAATT GGATATGCTC TTGTCCCCAT GATTGCTAGG GGTGTGATGT 
TGGGTGCTGA CCAGCCTGTT ATTCTACACA TGCTTGACAT TCCACCAGCT 
ACTGAATCTC TTAATGGCCT TAAGATGGAG CTGGTTGATG CTGCATTTCC 
TCTTTTGAAG GGAATTGTCG CAACAACTGA TGTTGTGGAG GCCTGCACTG 
GTGTGAATGT TGCGGTTATG GTTGGTGGGT TCCCCAGGAA GGAGGGAATG 
GAAAGGAAGG ATGTTATGTC AAAAAATGTC TCCATCTACA AATCCCAAGC 
TTCTGCTCTT GAGGCTCATG CAGCCCCTAA CTGCAAGGTT CTGGTAGTTG 
CCAATCCAGC AAACACCAAC GCTCTCATCT TAAAAGAATT CGCTCCATCC 
ATCCCTGAGA AGAACATTAC TTGCCTCACC CGTCTTGACC ACAACAGGGC 
ACTTGGCCAG ATCTCTGAAA AACTTAATGT CCAAGTTACT GATGTGAAGA 
ATGCGATCAT CTGGGGCAAC CACTCATCCA CCCAGTACCC TGATGTTAAC 
CACGCCACTG TGAAGACTCC CAGTGGAGAG AAGCCTGTCA GGGAACTCGT 
TGCTGATGAT GAGTGGTTAA ATACGGAATT CATCTCTACC GTCCAGCAGC 
GTGGTGCCGC CATCATCAAG GCGAGGAAGC AATCCAGTGC CCTATCTGCT 
GCCAGCTCTG CATGCGATCA CATTCGTGAC TGGGTTCTTG GCACTCCTGA 
GGGAACATTT GTCTCCATGG GTGTGTACTC TGATGGTTCG TATGGTGTGC 
CTGCTGGTCT GATCTACTCG TTCCCAGTAA CATGCAGTGG TGGCGAATGG 
ACGATTGTTC AGGGTCTCCC GATCGACGAG TTCTCAAGGA AGAAGATGGA 
CGCGACTGCC CAGGAGCTGT CGGAGGAGAA GACGCTCGCT TACTCATGCC 
TCAACTAAAA CTAAGCAATA CCCAGAGGGA CAGATAGTGA GCGATTGCCC 
GCTCCCGTGT TTTTGAATAA AAGAGACTTT TAAGTTCCAT CACATAGAAA 
CTGTTTATCT CAGACCGCTG CACATCGCGA GATGTGGAGC GCAGATGCCG 
TTGCTGGTTT TACTCCAGTG TGTATTGAGG CTTTGTACTA GCTCCCTTTT 
TTTTGCCTGG TGATTCGCAG GACATTTGCT GAAAACATTG AACCCATTTG 
ACATCTGATG GAATCATGGA CCAGTAGCAA GTACATTTTG CG

Gene models with high sequence identity

AT5G43330.1 [+] show detail - Lactate/malate dehydrogenase family protein
E-value: 5e-166; Score: 581.00

InterPro Scan Digest

Program	Description	E-value
HMMPIR	L-lactate/malate dehydrogenase	4.3e-64
superfamily	Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal	1.7e-60
superfamily	NAD(P)-binding domain	1.2e-44
PatternScan	Malate dehydrogenase, active site	0
HMMTigr	Malate dehydrogenase, NAD/NADP	3.6e-239
HMMTigr	Malate dehydrogenase, NAD-dependent, cytosolic	2.3e-267
HMMPfam	Lactate/malate dehydrogenase, C-terminal	1.2e-41
HMMPfam	Lactate/malate dehydrogenase, N-terminal	8.4e-33
Gene3D	NAD(P)-binding domain	2.5e-51
Gene3D	Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal	3.6e-71
HMMPanther	Malate dehydrogenase, NAD/NADP	3e-129

See the detailed result >

AT5G43330.1

Model type: Protein coding
Short Description: Lactate/malate dehydrogenase family protein
Computational Description: Lactate/malate dehydrogenase family protein; FUNCTIONS IN: in 6 functions; INVOLVED IN: in 6 processes; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Malate dehydrogenase, NAD-dependent, cytosolic (InterPro:IPR011274), Lactate/malate dehydrogenase, N-terminal (InterPro:IPR001236), Malate dehydrogenase, NAD/NADP (InterPro:IPR010945), Lactate/malate dehydrogenase, C-terminal (InterPro:IPR022383), NAD(P)-binding domain (InterPro:IPR016040), L-lactate/malate dehydrogenase (InterPro:IPR001557), Malate dehydrogenase, active site (InterPro:IPR001252), Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal (InterPro:IPR015955); BEST Arabidopsis thaliana protein match is: Lactate/malate dehydrogenase family protein (TAIR:AT1G04410.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link: InterPro Scan - TAIR