K04102

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K04102

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K04102

Determination of introduced cDNA(s)

  • J023087K13 - Rice Full-length cDNAs - Original: J023087K13

    full reading [+] show sequence

    Nucleotide sequence: J023087K13 - full reading 
    TTGACACACC GAGTCATCGC TCGCCGGAGT TAGAGTTCGT AGCGGCGAAG 
    GATATAGCCA TATATTATAG ATGGCGATTG GTGTTGGTGG CTGCTGCGCC 
    GTGCTGCTCG CGGCGGCGCT GCTCTTCTCC TCTCCGGCCA CCACATATGC 
    TTATGATTCC CTGGATCCAA ACGGCAACAT CACGATAAAA TGGGATGTGA 
    TGCAATGGAC TCCTGATGGC TATGCTGCCG TTGTCACACT GTCCAACTAC 
    CAGCAATTCC GGCACATCCA GCCACCGGGG TGGCAGCTGG GGTGGACATG 
    GCAGCAGAAG GAGGTGATCT GGTCCATGTA CGGCGCGCAG GCCATCGAGC 
    AGGGCGACTG CTCCATGTCC AAGGAGGGCA GCAATGTCCC CCACAGCTGC 
    AAGAAGCATC CCACCGTCGT CGACCTCCTC CCGGGCGCCC CAATCGACCT 
    GCAGATCGCC AACTGCTGCA AGGCTGGATC ACTGAGCGCA TTCAGCCAGG 
    ACCCGGCAAA TTCTGCCGCG TCGTTTCAGA TCATTGTAGG CCATTCTGGG 
    AACAGCAATG AGACTGTTAG GGTGCCGAAG AACTTCAGTC TTATGGCGCC 
    TGGTCCGGGG TATACCTGTA GCCGTGCTAT GATTGTGAAG CCTAGTAGGT 
    TTTTAAGTCC GGATGGGAGG AGGGCGACTC AAGTTCTGAT GACATGGAAT 
    GTGATCTGCA CATACTCCCA ATTTCTTGCA CAAAAGGTTC CATCCTGCTG 
    TGTTTCTCTC TCGTCGTTCG ACAATGACAA AACTGTTGAC TGCCCAACAT 
    GCTCTTGTGG CTGCCGAAAT GAAAAATCTA CTACAGGAAA ATGTGTAAAG 
    AAGAATGCAC CTGATTTGCA ATCCATCATT CACGGCCCTG GCAGATGGAC 
    CTGGCAGCCT CTTCTCCAGT GCACTTCACA CATGTGCCCA GTGAAAATTA 
    ACTGGCACTT GATGCTCAAA GACAAGGAAC ACTACAGAGT GAAAATCACT 
    GTCACTAACT TGAACTACCG CATGAATTTC ACCGAATGGA ACCTGGTTGT 
    TCAGTATCAT CCCATCCTCG ATATCACCCA GATATCTGGC TTCAATTACA 
    AGTCAATCCA AGTCGGCAAA ATAAATGATA CTACGATGCT ATGGGGAGTA 
    AAGCCCTACT ATGATTTGCT CATGCAAGCT GGTCCGCTTG GAAATGTGCA 
    AGGAGAACTG ATTGTGAGAA AGGATTTCAG GGCTTCTTCC ACTACTAACA 
    ATAACAAGGG AAGGGCCTTC CCAGTCCGTG TGTACTTCAA CGGTGATAAC 
    TGTGTGATGC CGCCTCCGGA TGCATATCCA GTTAGTATTA CGGCTTAGAG 
    GCGATCGTCA AGATGATTGT ATCGCATTAC TATATTTATG GGGTCATGAA 
    TAAAGTGTAT TGTCTTGCCT ATTGAAGATT AGAAGTAACT ATAATTAAAT 
    TGAATCTCCA ACTAGTATTA AGATTGTCAG AGGTCTGTTA TTTTGCTTGT 
    AGATAAAATT CTGCCTATGT TAACTTCGAT GGTGTCAAAG ATATCAAATC 
    CATAGCAGAT TCGTGGCAGG GGTC

    Gene models with high sequence identity

    1. AT5G60920.1 [+] show detail - COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family
      E-value: 1e-152; Score: 536.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPIR COBRA-like 6.7e-292
    HMMPfam Glycosyl-phosphatidyl inositol-anchored, plant 2.1e-70
    BlastProDom Glycosyl-phosphatidyl inositol-anchored, plant 3e-115

    See the detailed result >

    AT5G60920.1

    Model type
    Protein coding
    Short Description
    COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family
    Curator Summary
    Encodes a glycosylphosphatidylinositol-anchored protein localized primarily in the plasma membrane of the longitudinal sides of root cells. Necessary for oriented cell expansion in Arabidopsis. Cob mutants have abnormal roots that expand radially rather than longitudinally under certain growth conditions.
    Computational Description
    COBRA (COB); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to salt stress, multidimensional cell growth, cellulose microfibril organization; LOCATED IN: in 6 components; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl-phosphatidyl inositol-anchored, plant (InterPro:IPR006918), COBRA-like (InterPro:IPR017391); BEST Arabidopsis thaliana protein match is: COBRA-like protein 1 precursor (TAIR:AT3G02210.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR