K04103

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K04103

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K04103

Determination of introduced cDNA(s)

  • J013105A12 - Rice Full-length cDNAs - Original: J013105A12

    full reading [+] show sequence

    Nucleotide sequence: J013105A12 - full reading 
    GCACGGCGAC CCGCCTGCGG ACTACGGCTC GATCGCGGCG GTGGGGATGT 
    TCGTGGCGCT CATCTGCGTC TGCATCGTCG TCGGCCACCT CCTCGAGGAG 
    AGCCGATGGA TGAACGAGTC CATCACCGCG CTAATCATCG GGTTGGGTAC 
    TGGAGGAGTG GTTTTGATGG TGTCGAGCTG GAAGCACTCG CGCATACTGG 
    TGTTCAGCGA GGATCTCTTC TTCATTTACC TGCTCCCGCC GATCATATTC 
    AATGCGGGGT TCCAAGTTAA GAAGAAACAA TTTTTCCGCA ACTTCATGAC 
    TATTACGTTG TTTGGTGCGA TTGGGACCCT AATCTCTTTC AGTGTAATTT 
    CCCTCGGTTC TCTAGGACTA ATATCAAGGC TGAACATAGG TTCCCTTGAT 
    CTTGGAGATT ATCTTGCACT TGGGGCAATA TTCTCGGCAA CAGACTCTGT 
    ATGCACCTTG CAGGTTTTGA ACCAAGATGA AACACCCTTC TTGTACAGCC 
    TGGTTTTCGG GGAAGGTGTT GTCAATGATG CAACATCAGT TGTGCTATTC 
    AACGCAATGC AGAACTTTGA TCTTGCAAAT TTCAGCAGTG TTAAATTCTT 
    GCAATTCATT GGCAATTTTC TTTATCTGTT TGCCACGAGC ACCTTTCTTG 
    GAGTTGCTGC TGGACTTCTC AGTGCTTATA TCATAAAAAA GCTGTACTTC 
    GGCAGGCATT CCACTGATCG TGAAGTTTCT ATTATGATGC TCATGGCTTA 
    CTTGTCTTAC ATGCTTGCTG AATTGCTTGA TTTGAGTGGT ATTCTTACGG 
    TGTTCTTCTG TGGTATTGTA ATGTCGCACT ATACCTGGCA TAATGTAACA 
    GAGAGTTCCA GGGTCACAAC CAAGCACGCC TTCGCCACAT TGTCATTTAT 
    CGCCGAGACA TTTCTATTTC TTTATGTTGG TATGGATGCA TTGGATATGG 
    AGAAGTGGAA GATTGTCGGT GAAACATTCA GCCCAATGAA ATCTATTGCT 
    TTGAGCTCCA CTATTTTGTT CTTGGTGCTG GTCGCAAGAG CTGCTTTTGT 
    TTTCCCACTA TCTTTTTTGG CAAATTTGAC CAAAAAAACT GAAGAGGGAA 
    AGATCTCTAT TAAGCAGCAA GTTATTATTT GGTGGGCGGG TCTGATGAGA 
    GGTGCTGTGT CCATTGCATT GGCCTACAAT AAGTTCACAA GGTCAGGCCA 
    CACTCAACTC CCTAGTAATG CTATCATGAT CACTAGTACA ATCACTGTTG 
    TTCTTTTCAG CACGATGGTC TTTGGGCTCC TGACTAAGCC ATTAATCAGA 
    CTCCTAATTC CAGCAAGACA CCTCAACCGG GAATCGAGTG CGCTTTCGGA 
    TCCACCTAGC CCGAAATCCT TCCTTGATCC ACTGATCCTG AACGGTTCCG 
    ATGTCGATCC TGAGATTGGT GTGGGCATTC GCCGACCGAC AAGCCTCCGA 
    CTTCTCCTAG CAAGCCCGAC ACAGTCGGTC CACCATTACT GGCGCAAGTT 
    CGACAACGCC TTCATGAGGC CGGTGTTTGG GGGCCGAGGA TTCGTCCCCT 
    TCGTCCCCGG CTCACCAACT GAAAGGAGTG TGCCATTACT CCAGGGAAAT 
    GAGAACTAGA AAACTTTTTC AAAGGAGCGT GCCATTACTC CAGGGAAATG 
    AGAGCTAGAA AACATAAACA AAGGTTGTGT AAATCTGAGG TAGAAGAACA 
    ATCAGCAAAC ACAGTTTCTG TAAATTTATC TGAGGTAGTA ACAGCGTTCT 
    TGGTAGCTGT GGTACATGCT GATGTGTTAT GTACCTAATA TTGTAGATAG 
    CATGGATGTA TATATATAAA GCCTCTGTAG TTTAGCAAGA AATGGTGCTG 
    AAAATTTTGC CACGATTTAT ACAATATGGT ATGATTTTTG C

    Gene models with high sequence identity

    1. AT3G05030.1 [+] show detail - sodium hydrogen exchanger 2
      E-value: 3e-178; Score: 622.00

     

    InterPro Scan Digest

    Program Description E-value
    FPrintScan Na+/H+ exchanger, conserved region 2.1e-11
    FPrintScan Na+/H+ exchanger, conserved region 2.1e-11
    FPrintScan Na+/H+ exchanger, conserved region 2.1e-11
    FPrintScan Na+/H+ exchanger, conserved region 2.1e-11
    HMMPanther Na+/H+ exchanger, isoforms 1-4, conserved region 3.7e-153
    HMMPanther Cation/H+ exchanger, conserved region 3.7e-153
    HMMTigr Na+/H+ exchanger, subfamily 4.5e-20
    HMMPfam Cation/H+ exchanger 2.9e-61

    See the detailed result >

    AT3G05030.1

    Model type
    Protein coding
    Short Description
    sodium hydrogen exchanger 2
    Curator Summary
    member of Sodium proton exchanger family
    Computational Description
    sodium hydrogen exchanger 2 (NHX2); FUNCTIONS IN: sodium:hydrogen antiporter activity, sodium ion transmembrane transporter activity; INVOLVED IN: cation transport, sodium ion transport, regulation of pH, transmembrane transport; LOCATED IN: endomembrane system, integral to membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Na+/H+ exchanger, subfamily (InterPro:IPR004709), Cation/H+ exchanger, conserved region (InterPro:IPR018422), Cation/H+ exchanger (InterPro:IPR006153), Na+/H+ exchanger, isoforms 1-4, conserved region (InterPro:IPR018407); BEST Arabidopsis thaliana protein match is: Na+/H+ exchanger 1 (TAIR:AT5G27150.1); Has 5612 Blast hits to 5606 proteins in 1611 species: Archae - 51; Bacteria - 3727; Metazoa - 852; Fungi - 131; Plants - 439; Viruses - 0; Other Eukaryotes - 412 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR