K04109

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K04109

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K04109

Determination of introduced cDNA(s)

  • J023025A18 - Rice Full-length cDNAs - Original: J023025A18

    full reading [+] show sequence

    Nucleotide sequence: J023025A18 - full reading 
    GGGTGATCTG TCTCGCCGGG GCATCTCGAA AAGCATCCGA CTCCGACGCC 
    GCCGCGCGCC ACCACCCGGC CGATCGCCGA CGCCGCAGCC GCTGGAAGCA 
    GCAGGGACGA CGGAGAATCG GAGATGGACA TCGAGGCGTT CATCCACGGC 
    GGAAGCGGGG GCGGCGACGC CGACGCCGAC CACCCGCTCG GCATCTTCTC 
    CGCCGCCGAC CTCTCCGGCT TCGGCTTCGC GGACTCGAGC ACCATCACAG 
    GGGGCATTCC CAATCACATA TGGCCCCAGT CCCAGAACCT GAACGCACGG 
    CATCCTGCGG TCTCCACGAC AATTGAGTCG CAGTCATCAA TCTGTGCAGC 
    AAGTCCCACA TCAGCTACCA ATCTGAACAT GAAGGAGAGC CAAACTCTGG 
    GAGGCACAAG TGGTTCGGAT TCTGAAAGTG AATCGCTGTT GGATATAGAG 
    GGTGGTCCAT GCGAACAAAG CACGAACCCG TTGGACGTGA AGAGAGTGAG 
    AAGGATGGTG TCCAATCGGG AGTCTGCTCG GCGATCGAGG AAGAGAAAGC 
    AAGCTCACTT AGCTGATCTC GAGTCACAGG TTGACCAGCT CCGGGGCGAA 
    AACGCATCGC TTTTCAAGCA GTTGACGGAT GCCAACCAGC AATTCACAAC 
    TTCTGTCACG GACAACAGAA TCCTCAAATC AGACGTTGAG GCCCTCCGGG 
    TCAAGGTGAA GATGGCGGAG GACATGGTGG CGCGGGGGGC GCTGTCGTGC 
    GGGCTCGGCC ACCTGGGCGG GCTGTCGCCG GCGCTGAACC CCCGGCAGGC 
    GTGCCGCGTC CCCGACGTGC TCGCCGGCCT GGACTACGCC GGCGACGACC 
    CCTTCACGGC CGGGCTGTCC CAGCCGGAGC AGTTGCAGAT GCCCGGCGGC 
    GAGGTGGTTG ACGCCTGGGG CTGGGACAAC CACCCCAACG GCGGCATGTC 
    CAAGTGAAAC TACTGGTCCT ACTTCTATGT CAGCTCAGCT ACGTTTGAAA 
    CGTGATGTGT CCAAGTGAAC GGACTTGAGT TTTTCAGAGT CCTCGTGTCG 
    AAGTGTCATG CACTCTTCCC TATTCCTGTA ATAGAACTGA CTAGCTAAGA 
    GACTGAAAGT CTGAAACTAC GAAGTATAAA TGTGGTGGAA TTTGGAACT

    Gene models with high sequence identity

    1. AT5G24800.1 [+] show detail - basic leucine zipper 9
      E-value: 7e-29; Score: 125.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMSmart Basic-leucine zipper (bZIP) transcription factor 7.9e-18
    Coil coiled-coil 0
    ProfileScan Basic-leucine zipper (bZIP) transcription factor 11.174
    HMMPanther CYCLIC-AMP-DEPENDENT TRANSCRIPTION FACTOR ATF 0.0000028
    HMMPanther CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED 0.0000028
    Gene3D no description 0.00018
    PatternScan Basic-leucine zipper (bZIP) transcription factor 0
    HMMPfam bZIP transcription factor, bZIP-1 0.000000000000034

    See the detailed result >

    AT5G24800.1

    Model type
    Protein coding
    Short Description
    basic leucine zipper 9
    Curator Summary
    Encodes bZIP protein BZO2H2.
    Computational Description
    basic leucine zipper 9 (BZIP9); FUNCTIONS IN: DNA binding, protein heterodimerization activity, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827), bZIP transcription factor, bZIP-1 (InterPro:IPR011616), Basic leucine-zipper, C-terminal (InterPro:IPR020983); BEST Arabidopsis thaliana protein match is: bZIP transcription factor family protein (TAIR:AT5G28770.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR