K04141

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K04141

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K04141

Determination of introduced cDNA(s)

  • J013111A16 - Rice Full-length cDNAs - Original: J013111A16

    full reading [+] show sequence

    Nucleotide sequence: J013111A16 - full reading 
    GTCCGCGTAG TTTCTCTTCT TCTTGCAGAG AGAGATTATC CTCTTTCCCC 
    TTCCACCGCC ACTGCGCCGC AATTCGCCTT CGCTGCGGGC ATCTGCAGCA 
    GCAGAATCAT GGGCTGAAAT CGAACCACTG CGCGACAAGG GTGCCAAGGA 
    TAACTTTATT GTGCTGCTGA AGGAAGACAT CTTATTGACC TGCTAGTTCT 
    GTAGATGATT TTTGGAGTGC TATAAATATC GAGGCGCGAG TTCGGACTGC 
    AAGATACAAC ACAAGAGTGA GAAAAGAAAG GCTTTAGCTG AGTTACAGGA 
    TGGAACAAGG TCAGGGAGAT AGATACTGGT GCCACCACTG CGAGGAAGTG 
    ATCGAACCTG TGGAGCCTGA TATGAAGTGT CCTAGCTGTG ACAGCGGGTT 
    CGTGGAAGAG ATGGGGTCTG CAGGCTTTGA GCCATCGACC AACTTGAGGT 
    CTGATCGTAT CTCCCTCTGG GCACCACTGC TGCTCGGGAT GATGGGAGGC 
    TCATCGCGGC GAGCAAGGCG GCTCCGAAGG CAGATCATGG AGGATGATGA 
    CGACGACGAT GACGATGAGG ATGATGAAGA TGATTCAGAC CATGAGCTTG 
    AAGACTTGTT TAGGAGGCAG AGGAGGGGCT CATCTCTTGT AAGGCTGCTC 
    CAGACCCTCC GGGATGACTT GAGGGGCTTG GATGACATTG GCAGGGATAG 
    TGACAGAGAC AGGGAAAGGG AGAGAAGGGA GAGGGAGAGG CTGAGGGAGC 
    GGGAGAGGGA GAGGGAGAGG ATGAGAGAGA GGGAGAGAGA ACGGAGGAGA 
    GAAAGGACAG AAAGCTTGAT ACTGATCAAC TCCAACAATG AGGCCATTAT 
    TCTCCAAGGA ACATTTGGAC CTGATGACAA CCAGGATGAC TCGAGCAATA 
    CAAGTTCTGG TGTTTCACTT GGTGACTACT TTCTTGGTCC TGGATTAGAT 
    ATCCTCTTGC AGCATTTGGC GGAAAGTGAT CTTAATCGTT CTGGTACACC 
    ACCTGCCAAG AAGGAAGCTG TAGAAGCATT GCCAACTGTG AACATCCAGG 
    AAGTGTTAGG CTGTTCTGTC TGTCTTGAGG ATTTCGAAAT GGGGACAGAA 
    GCGAAGGAGA TGCCTTGTCA ACATAAGTTC CACTCCCAGT GCATACTTCC 
    ATGGCTGGAG CTACACAGTT CTTGCCCAAT CTGTAGGTTT CAGTTGCCTA 
    CCGAGGAGTC GAAAAACCCA TGTGAATCAG CCGGTGGAAT TGTGTCAGTG 
    AACGATGATG GAGATGATGC TGGTACAAGT AGTGACGTAG ATAGTGCTAA 
    CCAACCTGGT AGTCCTATAT TCTCTGCTTT GAGTGCACTT TTCTCAAATC 
    CATCATCCTC ATCCTCATCC TCATCTGATG ATAATGCACC ACACTCTTCT 
    GAGAGCTGAA GCCAGCGCTG GGCCTGGGCT TGCAATATGT CAATGGAGTT 
    CTGAAATGGG ACTCCTGAGA GGCCGGCATC TTTATATCTC GTGGTTTCTG 
    TACATATTTT AAAGTTTAAT CCGCTAGACA AGCTATTCGC GTTTCCTTTA 
    TGGAACCTGT GTGGTTTGTA ATCAGTTTGG TGCCTGTTAT GTCTAATTAT 
    GTAAAATAAA ATTTAGCCTC AAGCATGTTT ACCTACTCTC AAAAACTTGA 
    TCGGGGCCAG AGAACTGCTG ATCTGGTTAG CAGCTTGACC AATGCAAGGC 
    TACTTCAGTA CTATATATGG GGATATCCAA CATTGGCATT TCGCACTGCT 
    TTGTCAATTA AAGAACCCTG TTAGAACAAA GCTGCAGAAC AGTTACAGTG 
    CGAAGCAACT TTGTCATCTG CATACTTGTG GAATTTAGGA GTTGCTGATC 
    TAAACTATGA TTAGGGTGAT CACATCTGCA TTTATCCACA TATCTGACAT 
    TGTGTACTTC AGTTTCCATC

    Gene models with high sequence identity

    1. AT5G56340.1 [+] show detail - RING/U-box superfamily protein
      E-value: 6e-45; Score: 179.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan Zinc finger, RING-type 12.504
    HMMSmart Zinc finger, RING-type 8.9e-08
    Gene3D no description 4e-13
    Coil coiled-coil 0
    superfamily RING/U-box 3.2e-15
    HMMPanther RING ZINC FINGER PROTEIN 4.6e-38
    HMMPfam Zinc finger, C3HC4 RING-type 1.4e-06

    See the detailed result >

    AT5G56340.1

    Model type
    Protein coding
    Short Description
    RING/U-box superfamily protein
    Computational Description
    ATCRT1; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT4G26400.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR