K04151

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K04151

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
rosette leaf (PO:0000014)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K04151

Determination of introduced cDNA(s)

  • J033095N01 - Rice Full-length cDNAs - Original: J033095N01

    full reading [+] show sequence

    Nucleotide sequence: J033095N01 - full reading 
    GGCCCTACCT GTCTCCGCTC CTCCTCCGGC ACCGCCGGCG GCGGCGGCGG 
    CGGCGGCGCT GCCTAGCAAG TAGAATACCA AGATACGGCA CAGAAGAGCG 
    ATGAGGAGCC GCAGCCCCAG CAAGAGGAGA AGGCATGGCA GCAGGGGAAG 
    AAGCCCTCCA AGCTCACGAC ATGGCTGTGC CAAGGATAAG GAAGGTGCTG 
    CTGTAAGCCT CTTCGTCAGC AACCTTCCGC GAAGCTGCAG ACCTGAGGAT 
    GTCCAAGTTC CATTTCAAAA GTTTGGTCCT GTTCGGGATG TTTATCTGCC 
    AAAAGACTAC AACACTGGGG AGCCAAGAGG ATTTGCATTT GTGGAGTTTG 
    CTCACTCTTC TGATGCTTCT AAAGCGCGAT ATCACATGAA CCGTAAGATG 
    CTTTCTGGAC GTGAGATCAG TGTTGCTTTT GCTGTGCAGA CACGGAAAAG 
    GCCCGAGGAA ATGCGAAGAA TAATTGGAGC CAGGCATAAT TCCCCACAGA 
    GAAAGGAAGA GTGCCGAACA AACTCTCCAG GACAGCCTAA AGGACATGAT 
    GAGAAGCGGA AGCGCAGATC CTATACTCCC AAATATAAGG ATCGGCAGTA 
    TGCTGACATT GGTCGTGATG AGACGCCGCC TGCACCTGAT AGTGAGCGAC 
    CCTGGGCTCT GTGCAGGTCA CCCAGGCCAT CCCCTCCAGG GCAATCTCAT 
    TCTCGCTCAT ACTCACGTTC CCATTCTCTT CATCTCCATG ACCATGCTAG 
    AACACGGTCA TGCTCTCCTG CCCCAGGAAG GCAAGATGAC CAGTATGCTT 
    CCCCGCAGAG GAAGGAGCAC CAAACAAAAT CATCAGGACA GACAAAAGGA 
    CATGATGATA TGCGCAGATC CTATACTCCT GAATATAATG AATGCCAGGA 
    TGCTGACAAT GGTTTTGATG AGACACCTCC GGCACCTGAT GGTGAGCGAT 
    CCTCTGTGCT GGGCAGGTCA CCCCGGCCAT CCCCTCCAGG ACGGTCTCAT 
    TGTCATTCAC ACTCACGTTC CCGCTCTCCT GAACTCCGTG GCCATGCTAG 
    ATCACGGTCA TGCTCTCCTG CCACAGGAAG GCAAGATAAC CAGTCTACTT 
    CCCCACAGAG AAGGGAGAAG CACCAAACAA AATCATCAGG ACAGGCTAAA 
    GAACATGATG AGAAGCGCAG ATCCTATACT CCTGAATATA ATGATCGCCG 
    GGATGCTGAC AATGGTTATG ATCAGACGCC GCCGGCACCT GATGGTGAGC 
    GATCCTGGGC ACTGGGCAGG TCACCCCAGC CATCCCCTCC AGGACGGTCT 
    CATTTTCATT CACACTCGCG TTCCCGCTCT CCTGAACTCC GTGGCCGTGC 
    TAGATCTCGG TCATGCTCTC CTGCCCCCGG AAGGCAAGGA GATGACCAGT 
    ATGCTTCCCC ACAGAGAAAG GAGGAGCAGC AAACAAAATC ATCACGACAG 
    ACTAAAGAAC ATGATGAGGA GCGAAGATCC TGCACTCCTG AATATAGCGA 
    TCGCCGTGAT GCTTTCATCG GTCATGATGA GACACCGCCG TCAGCCGAAT 
    GGGGGAGTAA ACTGGGCACT GTGCAGGTTA TCTCCAACAC CGCCGCCAGC 
    AGCAACTAGA CTCTTCTGTT TATAGCTAGA CTAGATTGAA GGTGCGCTCA 
    ATATTTATGT CTTATCTCTT GTACATGTTG CGTGCATTTG GATTGATTAT 
    TCACACATAG AGTATACATA GCAGCAAAAT GAGGGATGGT CGACGATGAA 
    CGTTTCTTGT TTGTTTC

    Gene models with high sequence identity

    1. AT3G55460.1 [+] show detail - SC35-like splicing factor 30
      E-value: 1e-29; Score: 128.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther SERINE/ARGININE RICH SPLICING FACTOR 7.9e-32
    HMMPfam RNA recognition motif, RNP-1 6.7e-20
    ProfileScan RNA recognition motif, RNP-1 18.189
    Gene3D Nucleotide-binding, alpha-beta plait 1.3e-25
    superfamily RNA-binding domain, RBD 2.4e-24
    HMMSmart RNA recognition motif, RNP-1 6.5e-22

    See the detailed result >

    AT3G55460.1

    Model type
    Protein coding
    Short Description
    SC35-like splicing factor 30
    Curator Summary
    encodes an SC35-like splicing factor that is localized to nuclear specks.
    Computational Description
    SC35-like splicing factor 30 (SCL30); FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: response to oxidative stress, nuclear mRNA splicing, via spliceosome, RNA splicing; LOCATED IN: nuclear speck; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: SC35-like splicing factor 30A (TAIR:AT3G13570.1); Has 999798 Blast hits to 999477 proteins in 36048 species: Archae - 21842; Bacteria - 604317; Metazoa - 201442; Fungi - 24075; Plants - 55248; Viruses - 69771; Other Eukaryotes - 23103 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR