K04209

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K04209

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K04209

Determination of introduced cDNA(s)

  • J013169J03 - Rice Full-length cDNAs - Original: J013169J03

    full reading [+] show sequence

    Nucleotide sequence: J013169J03 - full reading 
    ACCAGCCAAC CGCCGCCGCC GCCGAGCACC ACTCGTCGCC GGCCATGGAG 
    ACCTCCGCCG CCGCGGGTGG CGCACACTTG ATCTACGTAT CCTCCGACGA 
    CGAGGAGGAC GAAACACGCG TCCTCCTTGC CGAATCCTAC AGCGCCGAGG 
    AGATCCAGAT CCAGCAGGCC ATCCTCCTCT CGCTCGACCC CTCCAGCGAC 
    GCGGACGCCG CCCATTCCTC CGCCTCCTCC TCCCGCCCCT CCGGCGCCGC 
    CTCCACCTCC GACGAACCCT CCTCCCTTCC CGACCGCAAG GGCAAGCGCA 
    AGCTATCATC GGAAGAAGAT GGCCCTATCG AATCCACGAG GAAGAAGCGG 
    CGGAAGCGCG GCCGATTCAA GTGCAGCGTC TGCATGGAGA AGCTACAGGT 
    CTCGGAGCAG TTCACCGTGA GCTTCTGTGC CCACGCGTTC TGCAACAGCT 
    GCATTGGCCG CTACGTCGCC GCCAAGATCT CCGAGAACGT AGCCGTGATC 
    GGGTGCCCTG ACCCCGGGTG CGAGGAGGGT TTCGTCGAGA TGGACACTTG 
    CAGGGATATC ATCCCGCCGG AGTTGTTTGA TCGGTGGAGC GTCTCGCTGT 
    GCGAGTTGGC ACTGGGTGAG AAGAAGTACT ACTGTCCGTT CAAGGATTGC 
    TCGGCGTTGC TGATCAATGA CAACGACGGC GCGGAGAAGA AGATCAGGGA 
    GACGGAGTGC CCCCACTGCC ACCGGATGTT TTGTGCAAGG TGTCGTGTGC 
    CTTGGCATGA TGGGATCAAA TGTAAGGAGT TCAGGAAGCT AGGCGATGAT 
    GAGAAGGGGG AGGAGGATCT GATGTTCAAG AAGCTGGCTG GGAAGAAGAA 
    ATGGCAGAGG TGCCCAAATT GTAAGATGTT TGTCTCGAGG ATTGATGGTT 
    GTTTACAGAT AAAATGCAGG TAATCTGTTT ATGTAACTCC ATATTTTGGT 
    TTGTGTCCCT CCTAAAATTA AGAGAATGGA TGACACCAGG ACAAAAAGGC 
    TGAATAGAGT TACAAATTGG TGTCCTCTGT TCATGTACAC TGAAGAGATG 
    AGGCAATCTT TTCGCTATTA TAGTGGTTAG AAAAAGAATA ATGGCTCAAG 
    CATAATGATT GCAGAATATA TTAGAATCTT TGCTATACTT TACACATGTC 
    AAATCAAATT TTGTGAATAA CTTCCATTTC TCCATCTTTA GATAGTTTTG 
    TTGGTGACGT TGATGTTAGC TAATTGGCAG TACATGTTTA AAGAGTTCAC 
    GTAAGTCATA GTGCACCATC ATTACATATT TGGAAGAGTA CATAGTACCT 
    TTGGAGTGTT ATAATGGAAA TAGCAAGTCT GTAGCTTTGC TTAGGTTTAG 
    TAGTGTTTTG GTGAATGCTA TCTACTGGGT CAGGATTTTA CTGGTATGGT 
    TAGTAGCAGT TTTGGTTACT GACCTTATGC TCAAGATTTT TCTTAATAAT 
    TGCTGTTCTC ATAGGTCAAT GCCAGGATAT ACTCCCAGCC ATTGTAGGTT 
    TTAACCATGC AGACACTTCA AAACTGCTGT CAATTCAACA GCAAAATAGG 
    GAAATGATTG AGCGCATGTT TGGTTTGTTG GCTGAATCAA CCTTACAAAT 
    TTTGACAATG CCAAATTTTG GTGTTACCAA AATTTGGTAA GGTTAAAATG 
    GTAGAATTGT TTGGTTTGTG ACCTTATCAA ATTTTGGCTT AGTTTTCTGA 
    ATGGAAGATT CCAGAATCAC CAAATTTTGG TAGAGTTAGG CAATGTAAGG 
    TTGTGATGGT AAGAGTTTGT TAGGTTCGTT ACCCTACCAA AATTTGTTAC 
    CTTACCTAAA TTTGATAAAG TTTATTTCAG TAACAAACTA ACGGCCCTAA 
    ATTTCCCCCT TGTATGGGCA TGAAACTGTT GACTACAGCC AGCAGTTTTT 
    GTTTTTGTTG TGCATAAATT TTGTTTTTTT CATAGTTCCA ACTAGAAGCT 
    TGTGGTTTTG GTTTGGTTAT CAGTAGATTT CTGCTGCACA GTTTGCTGCA 
    CCATTCTTTT CACTATGAAT CTGGAAATTT GGTCTACCTG CCATTTCTGG 
    TTTCTTAGAT ATGTCACAAA ACTTAAGGGA AAAATATTTT ACCTTATTTG 
    TCTCGTAAAC ACTGAATTCT AAAGGTGTAC TGTATAATGT TATTTATGCA 
    TTTTCAGTCT TCGTCATTTC ACTAACACGT TTTCATGTTT GTCTTGAAGG 
    TGTAAACAGT ATTTCTGTTA CTACTGTGCT GCCCCAATGA AGAAAGATAG 
    TCACTACTGT ATGAGTTGCC ATCGTTAGTG AAGGGTCTTA TCTAAACACT 
    GTAAGAGTTG CCATCGTTAG TGAAGGGTCT TATCTAAACA CAGACTTTGT 
    ACATAGGTAT AGGTAACATG TAATAAATAT AAGTATGGTA TCATCTCCTT 
    GAAGTGGAAA TACATTTTGT ACAATGTTAA TGATCTTAAT GACCTGAAGA 
    GCAGGTCACT GATCCAAGTC TCAGTGTCAT CTTTTTATTA ATCAATTTTG 
    CGTGAACTTT GGATGG

    Gene models with high sequence identity

    1. AT3G53690.1 [+] show detail - RING/U-box superfamily protein
      E-value: 3e-53; Score: 207.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily RING/U-box 3.3e-11
    superfamily RING/U-box 0.00071
    HMMSmart Zinc finger, C6HC-type 4.5e-11
    ProfileScan Zinc finger, RING-type 10.35
    HMMPfam Zinc finger, C6HC-type 2.4e-08
    HMMPanther ARIADNE RING ZINC FINGER 5.6e-24
    PatternScan Zinc finger, RING-type, conserved site 0

    See the detailed result >

    AT3G53690.1

    Model type
    Protein coding
    Short Description
    RING/U-box superfamily protein
    Computational Description
    RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, C6HC-type (InterPro:IPR002867), Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT3G14250.1); Has 3158 Blast hits to 3141 proteins in 218 species: Archae - 0; Bacteria - 0; Metazoa - 1307; Fungi - 709; Plants - 671; Viruses - 0; Other Eukaryotes - 471 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR