K04212

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K04212

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K04212

Determination of introduced cDNA(s)

  • J023020L08 - Rice Full-length cDNAs - Original: J023020L08

    full reading [+] show sequence

    Nucleotide sequence: J023020L08 - full reading 
    TCGTTCGTTT GGGTGTGGGG GTTGGGGTTT CTGAAGGCCC CGCCGCTGTT 
    GAGCGGCCAG TCGGCGGCGA GCTCGGAGGC GGAGAGCAGC CTCACCGACA 
    TCCTCGTCCG GAAGCCATCC TCCTCCTCCG CCACCTCTGG CAACTTGAAT 
    CCAAATGTGA TGTTCGAGCT TTTCTCTCTG TACCGTGAAT GGCAAGAAGA 
    GAAGGCCAAG AAAATTAGTG AAACACAGGA AGAGATAGAA AACAAGATAG 
    AAACAGCAGA TGCTTTGTCC ATTAAGCTTC TCCAGCGGTT CAATTATTCT 
    GTTACTTCCA TGAGATCAAC CTCTCACAAC CTTGCTGAAG TCCGTCCACT 
    GCAGGTGGAA GTTGGTGAGT TGCCAAGnTT GGTTnTATAG TGTCnCnTAn 
    ATAnnGnTnn AGCTCTnnnT AGGTGGACAC TATAGAACCA GATCCGGCTT 
    CCAGACGCTT CTCTCCTCCT CTAATCTCAA GTCTCTGTCT CGTCGTCCTC 
    GCATCTCCAC TCGCCATGGG CAAGATTAAG ATCGGAATCA ACGGTTTCGG 
    AAGGATCGGG AGGCTCGTGG CCAGGGTGGC CCTCCAGAGC GAGGATGTCG 
    AGCTCGTCGC CGTCAACGAC CCCTTCATCA CCACCGACTA CATGACCTAC 
    ATGTTCAAGT ACGATACCGT GCACGGCCAA TGGAAGCACA GCGACATCAA 
    GATCAAGGAC TCCAAGACTC TGCTCTTGGG CGAGAAGCCG GTCACCGTTT 
    TCGGCATCAG GAACCCTGAC GAGATTCCGT GGGCTGAGGC TGGTGCTGAG 
    TATGTCGTGG AGTCCACCGG TGTCTTCACT GACAAGGAGA AGGCTGCTGC 
    TCACTTGAAG GGTGGTGCCA AGAAGGTTGT CATCTCTGCC CCGAGCAAAG 
    ATGCTCCGAT GTTTGTCTGC GGTGTCAACG AGGACAAGTA CACTTCAGAT 
    ATTGATATTG TCTCAAATGC TAGCTGCACC ACAAACTGCC TTGCTCCTCT 
    TGCCAAGGTC ATTCATGACA ACTTTGGTAT TATCGAGGGT CTGATGACAA 
    CTGTTCATGC CATCACTGCC ACCCAAAAGA CCGTTGATGG ACCGTCCAGC 
    AAGGACTGGA GGGGTGGCAG GGCGGCCAGT TTTAACATCA TTCCCAGCAG 
    CACTGGTGCT GCCAAAGCTG TTGGCAAGGT TCTTCCTGAT TTGAATGGCA 
    AGCTTACGGG AATGTCCTTC CGTGTTCCCA CTGTCGATGT CTCAGTTGTT 
    GATCTCACAG TTAGAATCGA GAAGGCTGCC TCATATGATG CTATCAAGAG 
    TGCTATCAAG TCTGCATCAG AGGGAAAGCT CAAGGGAATC ATAGGATATG 
    TTGAGGAAGA CCTGGTTTCT ACTGACTTTG TTGGTGACAG CAGGTCGAGC 
    ATCTTCGACG CCAAGGCTGG AATTGCTCTT AACGATAACT TTGTCAAGCT 
    TGTCGCCTGG TACGACAACG AGTGGGGTTA CAGCAACCGT GTCATCGACC 
    TGATCCGCCA CATGGCCAAG ACCCAGTAGA ATCCTTTTGC TTGCCATGGT 
    ATTCCATGGC CGCCGAGCCG GAGATACCGG TATGCTTTGT CTATGCTGAG 
    AATAAAACGT GGACGGTGTT CATCAGGACC CACCCCCTCT GTTAATGCTA 
    GTTGGGATAA TGAGTTGCAT TTTGTTTTCC AATCTACCTA CTTGTAAGTT 
    GTAACGATGC TGATGATATG GACCTGAGTC TACTTTTTTG CTTGTGAAGA 
    ATATAAGCCG TCCAGTGCAG TTGTAATTTT GTT

    Gene models with high sequence identity

    1. AT3G04120.1 [+] show detail - glyceraldehyde-3-phosphate dehydrogenase C subunit 1
      E-value: 5e-160; Score: 561.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther Glyceraldehyde 3-phosphate dehydrogenase subfamily 1.1e-267
    superfamily Glyceraldehyde-3-phosphate dehydrogenase-like 2.3e-84
    superfamily NAD(P)-binding domain 4.1e-69
    FPrintScan Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain, subgroup 5.6e-48
    FPrintScan Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain, subgroup 5.6e-48
    FPrintScan Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain, subgroup 5.6e-48
    FPrintScan Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain, subgroup 5.6e-48
    FPrintScan Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain, subgroup 5.6e-48
    HMMSmart Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain 4.4e-87
    HMMPIR Glyceraldehyde 3-phosphate dehydrogenase family 1.5e-174
    HMMTigr Glyceraldehyde-3-phosphate dehydrogenase, type I 1e-193
    Coil coiled-coil 0
    PatternScan Glyceraldehyde 3-phosphate dehydrogenase, active site 0
    HMMPfam Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain 6.1e-73
    HMMPfam Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain 3.2e-55
    Gene3D no description 3.2e-81

    See the detailed result >

    AT3G04120.1

    Model type
    Protein coding
    Short Description
    glyceraldehyde-3-phosphate dehydrogenase C subunit 1
    Curator Summary
    encodes cytosolic GADPH (C subunit) involved in the glycolytic pathway but also interacts with H2O2 potentially placing it in a signalling cascade induced by ROS.
    Computational Description
    glyceraldehyde-3-phosphate dehydrogenase C subunit 1 (GAPC1); FUNCTIONS IN: glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) activity, copper ion binding, glyceraldehyde-3-phosphate dehydrogenase activity; INVOLVED IN: in 11 processes; LOCATED IN: in 8 components; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Glyceraldehyde 3-phosphate dehydrogenase family (InterPro:IPR020831), Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain (InterPro:IPR020829), Glyceraldehyde 3-phosphate dehydrogenase subfamily (InterPro:IPR000173), Glyceraldehyde-3-phosphate dehydrogenase, type I (InterPro:IPR006424), Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain, subgroup (InterPro:IPR020832), Glyceraldehyde 3-phosphate dehydrogenase, active site (InterPro:IPR020830), Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain (InterPro:IPR020828); BEST Arabidopsis thaliana protein match is: glyceraldehyde-3-phosphate dehydrogenase C2 (TAIR:AT1G13440.1); Has 25372 Blast hits to 25360 proteins in 6350 species: Archae - 71; Bacteria - 10995; Metazoa - 2358; Fungi - 2851; Plants - 3864; Viruses - 0; Other Eukaryotes - 5233 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR