K04228

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K04228

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K04228

Determination of introduced cDNA(s)

  • J013073L03 - Rice Full-length cDNAs - Original: J013073L03

    full reading [+] show sequence

    Nucleotide sequence: J013073L03 - full reading 
    ATGAGGGCCC TGCAGGACTT GGTCCCCAAC ACAAACAAGA CAGACAGGGC 
    AGCTATGCTA GACGAAATCC TTGATTATGT GAAGTTTCTT CGGCTTCAAG 
    TAAAGGTTCT GAGTATGAGC AGGCTGGGTG GTGCTGGTGC AGTTGCGCAG 
    CTGGTTGCTG ATATTCCAAT CTCAGTTAAG GGGGAGGCAA GTGACAGTGG 
    GAGCAAACAA CAGATTTGGG AAAAGTGGTC AACCGATGGC ACAGAAAAGC 
    AGGTAGCGAA GCTGATGGAA GAAGACATCG GAGCAGCAAT GCAATTCCTC 
    CAATCCAAAG CACTATGCAT GATGCCAATC TCTCTTGCGA TGGCGATCTA 
    TGACACACAG CATTCGCAGG ACGGACACTC AGTGAAGCCT GAACCCAACA 
    CTCCTTCATA GTATAGTAAC AATAACACTA GCATGCACAC CTACTACTAC 
    TAGGCGTCGA CCTATCCAAA GTGTAGGATA TACTGGACAT TTTGATTTGC 
    TAACTGGAAA AGGCCTAAGG ATCCTCTCCT CAAAGTAGTA CCCATGGTAT 
    ATGATGTCGT CTCCTCTTTT CTTCTTTTCT TCAAAGGTGC TTTGATTGCA 
    AAGATATGGT AAGCGATGTT CTCATGCTCC TACATCTTTC AATGCCCCTA 
    TCGAGTGTGA GTGATGGGTA GAGCTACCAA AGAGTCTGGC ATGCGCTCAT 
    ATCATTTCCT TTTGGGTCTG TAGTGCACTA GCCATACACT TTGTGGTGGG 
    GTCGGTCAGT CTTTTGGTAG TGGACGTTTG GACTAATGAA AAGAAGCTGA 
    TGTATGTGTG TTAAGTCTGC ACAAATGGTT GACACAATTT AAAAGAATGT 
    TCAGATGGAA GATGATGTTG ACGGTGAATG GTGGTGCTAT TTCTTGTCTA 
    TTTTTCCAAA GCGGCAACGG ATGTTTTAGT CAATGGAGGC GAAGCGTGTA 
    TTAATCTGGT TGCTAGTGGG AGCGTGCTCC TTATGTGCTT TACTTTTCTG 
    TCTGCAAGTC ATAGTCTTGA TAAGAACCTG CCCTCTTAAA GTTTTTAGCC 
    TCTTGTATTA TTGGTTCACT CATGAAACTA TATATATCAT CTGTGCTGAC 
    TT

    Gene models with high sequence identity

    1. AT4G02590.3 [+] show detail - basic helix-loop-helix (bHLH) DNA-binding superfamily protein
      E-value: 4e-40; Score: 162.00

     

    InterPro Scan Digest

    See the detailed result >

    AT4G02590.3

    Model type
    Protein coding
    Short Description
    basic helix-loop-helix (bHLH) DNA-binding superfamily protein
    Computational Description
    unfertilized embryo sac 12 (UNE12); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: double fertilization forming a zygote and endosperm, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT1G03040.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR