K04230

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K04230

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K04230

Determination of introduced cDNA(s)

  • J023077C23 - Rice Full-length cDNAs - Original: J023077C23

    full reading [+] show sequence

    Nucleotide sequence: J023077C23 - full reading 
    GCCTTTTCTC CCCGTCCCCC AAATTCGCAT CTCTACCCTC GCCGCCGGCG 
    GCCAAGCGCC ACCGCCGACC ACCGCCGTCC CCCGCGACCT CGCCGTCGTC 
    GACCACGACG AGCGGTGGCC GCCGCCGCCG CCGCCCTCCT CGAGTTCGAC 
    CCCGTTCATC TCATCCGTCG TCCTCCGCGA GATAACCCTC CATCGCTGTC 
    TCGGGCGATG TCGAAGCAGC TGGTGTCGCG GCTGCTGGGG ATGTTCCGCT 
    CGCGGGCGCA GGTGGGCGCC GACAAGTTCG GCAACCGCTA CTTCACCCGC 
    GTCGAGGAGG TCGACGGCGT CATGAAGGAG AAACGGTGGG TGGAGTTCAA 
    GGGGAGCGAC CAGGATCCGA CCACTGTTCC AGTTGAGTGG ATTTGCTGGT 
    TGAATGGACA AAGGAAGAAA GCTCCGACAC CAGAGGAGTT GGCTGAGCTG 
    GAAGCAAGGC GTGAACGTGT CAAGCAAAAT ATTGAATTGC TCAAAAAGAA 
    AGAAGAGGAA AAGAAGACCG GTGTCCGACC AGTCAAGACG GTTGGGAAGT 
    TTGAATCTCC AAATCTCAAA AGTTTTATTC AGCAGTTTCC TGATACTTCG 
    CTAGATCAGA GAAAAGGACA TGATGAGGTA TCTAGATCAA AGGATGGAAC 
    TGATACAGAG GATGCCACCA TAGATACTGA CAGGTCTTCT GAACCGACAG 
    GAACTGGTGC TACCTTCAAA CCAGGGACAT GGCAGCCACC AACTTGAATT 
    ACAACAAACA TATAATTGTA GCAGGTGAAA TGGTGCTGCA GTCAGCATCA 
    GCATTTTCCT TTGAGAGTGT ACTATCTTCC AGTTATTTGA TGAAGAAATG 
    GAGATTTATT TTTACTGTGA TTACCACTGT ACACTCCGGG AGTTACATCA 
    ACAAATGCAG TATCCGGATG ACAACAGATA TATACTTACC AATCTTATCA 
    AATACATGAT CATTCATGTG CCTGACTAAT TAGTTTTGTT ATTGAGAAAT 
    ATGG

    Gene models with high sequence identity

    1. AT4G26965.1 [+] show detail - NADH:ubiquinone oxidoreductase, 17.2kDa subunit
      E-value: 2e-36; Score: 149.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther NADH:ubiquinone oxidoreductase, 17.2kDa subunit 1.8e-06
    HMMPfam NADH:ubiquinone oxidoreductase, 17.2kDa subunit 4.6e-15
    Coil coiled-coil 0

    See the detailed result >

    AT4G26965.1

    Model type
    Protein coding
    Short Description
    NADH:ubiquinone oxidoreductase, 17.2kDa subunit
    Computational Description
    NADH:ubiquinone oxidoreductase, 17.2kDa subunit; FUNCTIONS IN: electron carrier activity, oxidoreductase activity, NADH dehydrogenase (ubiquinone) activity; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: NADH:ubiquinone oxidoreductase, 17.2kDa subunit (InterPro:IPR007763); Has 317 Blast hits to 317 proteins in 96 species: Archae - 0; Bacteria - 24; Metazoa - 85; Fungi - 52; Plants - 37; Viruses - 0; Other Eukaryotes - 119 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR