K04232

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K04232

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K04232

Determination of introduced cDNA(s)

J033135L17 - Rice Full-length cDNAs - Original: J033135L17

full reading [+] show sequence

GCAACACAAA AGTTCAGTGA AAATGTGCTG GATGCAACTA AGAAATTTGA 
GAAATTAATT ACTGATAAGA ATGAAATTGA TGGGTTACCT GCCACAGCAC 
TTGGCTTAGC AGCACAGACT GCCGCGTCAA AGGGTCATGA AAATGCTTCG 
GCTGAAAACG GACCATGGAT CATCACATTG GATGCGCCAA GCTATATTGC 
TGTTATGCAG CATGCACGGA ACAGAGCACT TCGTGAAGAA GTTTATCGTG 
CTTACCTAAC CCGTGCCTCT AGTGGCGACC TTGATAACAC CAATATCATC 
AGTCAAATTC TAAAGTTGAG GCTGGAGAAG GCTAAGCTAC TCGGCTACAA 
GAACTATGCT GAGGTAAGCA TGGCTCAGAA AATGGCAACT GTTGACCGTG 
TAGAAGAGCT TCTTGAGAAA CTCCGTGCTG CCTCCTGGGA TCATGCTGTT 
AAAGATATGG AAGATCTAAA AGCCTTTGCT AAAGAGTCTG CTTCTCCAGA 
AGCCAATGAC CTGGCTCACT GGGACCTAAG CTTCTGGAGT GAACGACTCC 
GGGAATCTAA ATATGATATC AACGAGGAAG ATTTGCGTCC TTACTTTGCA 
CTACCCAAGG TTATGGATGG CCTCTTCAGT CTCGCAAATA GGCTCTTTGG 
TGTTAGCGTA GAGCCTGCAG ATGGACTGGC TCCTGTTTGG AATAGTGATG 
TCAAATTTTA CTGTGTCAAA GATTCTTCGA ATAGCCCTGT TGCTTATTTC 
TACTTCGATC CATATTCAAG ACCATCTGAG AAGCGTGGAG GGGCTTGGAT 
GAATGTGGTT TTTTCTCGCA GTCGTGTGCT TGCTCGCAAT GGTTCACCTG 
TCAGGCTTCC TGTTGCCCAT ATGGTGTGTA ATCAGACACC ACCAGTTGGT 
GATAAACCCA GTCTTATGAC CTTCCGTGAG GTTGAAACTG TGTTCCATGA 
ATTTGGTCAT GCGCTGCAGC ACATGCTTAC CAAACAAGAT GAAGGATTTG 
TTTCTGGTAT TCGTGGAGTA GAATGGGATG CTGTAGAGCT GCCCTCTCAG 
TTCATGGAGA ACTGGTGCTA CCACAAGAAT ACTCTTTTGA GCATTGCAAA 
GCATTATGAA ACAGGCGAAC TTCTTCCAGA GGAAATTTAT GCAAAGCTTG 
TCGCTGCAAA GAATTTCCGT GCTGGCACCT TCAGTTTACG TCAGATACGT 
TTTGCTAGTG TGGACATGGA GCTGCATACG ACTTACGATC CAAATGGTTC 
ATTGTCCATA TATGATGTCG ACCGAAGAGT TGCTGAGCGA ACACAGGTTC 
TTGCTCCTCT TCCGGAGGAT AAATTCCTGT GCAGCTTTAG CCATATATTT 
GCAGGAGGCT ATGCAGCTGG ATACTACAGT TACAAGTGGG CTGAAGTATT 
GTCAGCTGAT GCATTCTCAG CATTTGAAGA CGTTGGTTTG GACAATGAGA 
AGGCAATTGA GGAAACTGGC AGACGATTCA GAGAAACAGT CCTTGCGCTT 
GGAGGTGGAA AATCTCCACT CGAGGTGTTT GTGTCTTTCC GCGGACGGGA 
GCCATCACCG GAAGCTCTGC TCAGGCACAA CGGCTTGCTA CCTGTTGCTG 
CATTGTGATA ACTCATGCTC GATTGTCCCC TTCTTTTTTC TTTTAACTTG 
CGAAAACGGC TTGTAAGATG TTATTGATTG ATGGCATATC AGCAACACGC 
TAAAAGTGCC GTGTCCTGCT TACAACATGG AAAACAAGTT GCTGTGCACA 
ACCATTATAT AATGATCATC GCTGCTTCTT GCCGTTC

Gene models with high sequence identity

AT5G65620.1 [+] show detail - Zincin-like metalloproteases family protein
E-value: 0; Score: 848.00

InterPro Scan Digest

Program	Description	E-value
Coil	coiled-coil	0
Coil	coiled-coil	0
HMMPanther	OLIGOPEPTIDASE A	1.2e-195
HMMPanther	PROTEASE M3 THIMET OLIGOPEPTIDASE-RELATED	1.2e-195
Gene3D	no description	1.4e-108
superfamily	Metalloproteases ("zincins"), catalytic domai	4.2e-173
HMMPfam	Peptidase M3A/M3B, thimet/oligopeptidase F	7.5e-139

See the detailed result >

AT5G65620.1

Model type: Protein coding
Short Description: Zincin-like metalloproteases family protein
Computational Description: Zincin-like metalloproteases family protein; FUNCTIONS IN: metalloendopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: cytosol, chloroplast, chloroplast stroma; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M3A/M3B, thimet/oligopeptidase F (InterPro:IPR001567); BEST Arabidopsis thaliana protein match is: Zincin-like metalloproteases family protein (TAIR:AT5G10540.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link: InterPro Scan - TAIR