K04241

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K04241

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
cauline leaf (PO:0000013)
  • epinastic (PATO:0000945)
    (Cauline leaf::Shape::epinastic)
  • abnormal (PATO:0000460)
    (Cauline leaf::Others)
rosette leaf (PO:0000014)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)
  • upturned (PATO:0002031)
    (Rosette leaf::Shape::hyponastic)
stem (PO:0009047)
  • present in fewer numbers in organism (PATO:0001997)
    (Stem::Number::few)
  • abnormal (PATO:0000460)
    (Stem::Others)
T2  
whole plant (PO:0000003)
  • increased height (PATO:0000570)
    (Adult plant::Plant height::tall)
rosette leaf (PO:0000014)
  • desaturated green (PATO:0001272)
    (Rosette leaf::Color::pale)
  • present in greater numbers in organism (PATO:0000470)
    (Rosette leaf::Number::many)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K04241

Determination of introduced cDNA(s)

  • J033121D04 - Rice Full-length cDNAs - Original: J033121D04

    full reading [+] show sequence

    Nucleotide sequence: J033121D04 - full reading
    GGTTTACACC TGCTCATCTT CGTCGCGACT CGGTGTTGGC TCCAGAAATC 
    TCGCCAAGAG ACCATAAGCC CAATCCAAAT CTCTCCGCGT AGGAAGCAGA
    TGAAGATCAT CCCGGTCGCT TGCCTGGAGG ACAACTATGC CTACCTAATC
    GTGGACGAGA GCACCAAGTC GGCGGCGGCC GTCGACCCCG TGGAGCCGGA
    GAAGGTGCTT GCGGCGGCCG CGGAGGTCGG CGTCCGCATC GACTGCGTAC
    TCACCACCCA CCATCACTGG GATCATGCTG GTGGCAATGA AAAGATGGCG
    CAGTCAGTGC CAGGGATTAA GGTCTATGGA GGATCCCTGG ACAATGTGAA
    AGGATGCACT GATCAGGTGG AGAATGGAAC CAAATTGTCC CTTGGGAAGG
    ACATTGAGAT ACTATGCCTG CACACACCGT GCCACACAAA AGGACATATC
    AGCTATTACG TCACTAGTAA AGAGGAGGAA GATCCAGCAG TGTTTACTGG
    AGACACCTTG TTCATTGCTG GTTGTGGGAG ATTTTTTGAG GGCACTGCAG
    AGCAAATGTA CCAATCCCTT TGTGTAACAC TGGGCTCGCT GCCTAAGCCA
    ACTCAAGTTT ACTGCGGGCA TGAGTACACT GTGAAGAACC TGAAATTCAT
    ACTGACGGTC GAGCCAGATA ACGAAAAAGT GAAGCAGAAA CTAGAATGGG
    CTCAAAAGCA GCGTGAAGCA AACCAACCAA CTATTCCATC AACTATAGGA
    GAGGAATTTG AGACAAACAC CTTCATGCGT GTTGATCTGC CAGAAATACA
    GGCAAAGTTT GGTGCCAAGT CGCCAGTTGA GGCCCTGCGA GAAGTTAGGA
    AGACCAAGGA TAACTGGAAA AGTTAATACC GATGCAACTG TTACTCTTCG
    TCTGATGGTC CGGTCTCTCG AGGTTAGCTA ATGCAGAAAG CTTACCCTGT
    AGGTGGGGCT TACTGCCGTG CAACGCTTTA AGAGCGATGG TGTTAGGAAG
    AGTTTTAAGC TATAAATAAG CTCCATGTTA ATGTTCAAGG AGACATCATC
    AGATGTGCAT GTTAATGCTG GTCTTGTCTA TCACTGTACT ACATGAGCTA
    CGTATGAATT TTGGAGTTGG TCTTGTTTAA CTTTGAAAAG TCGAAAACGA
    GAGGTAGTAG TCATCCTCCA GTTTACATAT AAACGCATAA TAAGGGTGAA
    GTGAATCAAG ATTATTGTGC C

    Gene models with high sequence identity

    1. AT3G10850.1 [+] show detail - Metallo-hydrolase/oxidoreductase superfamily protein
      E-value: 2e-113; Score: 406.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Metallo-hydrolase/oxidoreductase 6.2e-71
    HAMAP Hydroxyacylglutathione hydrolase 36.257
    HMMSmart Beta-lactamase-like 1.1e-31
    HMMPfam Lactamase_B 1.9e-24
    HMMPanther HYDROXYACYLGLUTATHIONE HYDROLASE 9.5e-88
    HMMPanther BETA LACTAMASE DOMAIN 9.5e-88
    Gene3D no description 1.6e-82
    HMMTigr Hydroxyacylglutathione hydrolase 5.4e-95

    See the detailed result >

    AT3G10850.1

    Model type
    Protein coding
    Short Description
    Metallo-hydrolase/oxidoreductase superfamily protein
    Curator Summary
    glyoxalase II cytoplasmic isozyme (Glx2-2) mRNA, complete
    Computational Description
    GLY2; FUNCTIONS IN: hydroxyacylglutathione hydrolase activity; INVOLVED IN: methylglyoxal catabolic process to D-lactate; LOCATED IN: endomembrane system, cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Beta-lactamase-like (InterPro:IPR001279), Hydroxyacylglutathione hydrolase (InterPro:IPR017782); BEST Arabidopsis thaliana protein match is: glyoxalase 2-4 (TAIR:AT1G06130.2); Has 13211 Blast hits to 13207 proteins in 2289 species: Archae - 256; Bacteria - 8297; Metazoa - 430; Fungi - 311; Plants - 206; Viruses - 0; Other Eukaryotes - 3711 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR