K04317

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K04317

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K04317

Determination of introduced cDNA(s)

  • J033117F04 - Rice Full-length cDNAs - Original: J033117F04

    full reading [+] show sequence

    Nucleotide sequence: J033117F04 - full reading 
    GAAAAAGGCA AAGCTCCTTC CTTCTCCTCT GTCTCCTCCT CTCTAGAGAG 
    AGAAACAGAA AAAAGGAGGA GACTAGGGCT CTGCTCCTCC CCCTGCGCCG 
    GTTGGTCGGA GCTCTGCCTC CTCCTGATTC TGCTGTCCCC TCCCCTCCCC 
    GATCCACCTC CTCCTCCATC TCCTTCTCCT CCCGCCGATC CGATGCGTCA 
    TCACTAGCCT CCCCTCCCGC GCTTCCACCA ACCACTGCCC CTCCACCCTC 
    ACCTCGTGGT TTGGTAATTT GGTTGGCCGC TTGTCCCCTT CCATCCACCG 
    ATCCACCTTC CCGTTGCTGC GGGGATGGCC GTCGTCGAGA CCTCCGCCGA 
    CCACGCCGCG CCTCCGCCGC CCGAGGGGGA CGCCGGGGAG AGGGAGATGC 
    GGGATCTGGA GGACCTGCTC TCCAAGCTCA ACCCCATGGC CGAGGAGTTC 
    GTCCCGCCTT CCCTCGCCGC CGCCTCCCCC ACCGCCTACG CCTACTACCC 
    CACCCCCACC CCCTCCCACG TCTTCCCCGC CGTCGATGGC CTCGCCGGAC 
    CCCGACCCAG GAAGAAGGGC GGAGGAGGAG GTGGAGGAGG AGGGTTCGGT 
    GGCCAGGGCC ACGCCGGGAA GCGCCGGATG AACAGCCGCA CCAGCATGGC 
    GCAGCGCGAC GAGGTCATCC GCCGCACCGT CTACGTCTCC GACATCGATC 
    ACCAGGTCAC TGAAGAGCAA TTGGCAGCAC TATTTATCAA CTGTGGACAG 
    GTTGTGGACT GTCGTATGTG TGGGGATCCG AATTCTGTTC TTCGTTTTGC 
    TTTCATAGAG TTCACTGATG AGGAGAGTGC AAGGGCTGCT CTAAATTTGT 
    CGGGAACCGT GCTTGGATAT TATCCTGTCA GGGTGCTGCC ATCAAAAACT 
    GCGATTGCAC CTGTTAACCC AACATTTCTG CCCAGGTCCG ATGATGAGCG 
    TGAGATGTGT GCAAGGACTA TTTACTGCAC AAACATTGAC AAGAAGGTCT 
    CTCAGGCAGA TGTGAAATTG TTCTTCGAGT CGATATGTGG AGAGGTATAT 
    CGGCTGAGGT TGCTTGGTGA CTACCATCAT TCTACTCGCA TTGCCTTTGT 
    GGAGTTTGTG ATGGCTGAAA GTGCCACTGC TGCTCTCAAC TGCAGTGGTG 
    TCATACTGGG TTCCTTGCCA ATAAGGGTGA GCCCCTCAAA GACTCCGGTG 
    CGTCCCCGTG CACCTCGCCA GCTGATGCAC TAGGTGTTGT AGGTACAGGA 
    GGTGCTGATG GCACTGCTTA TATATAGAGA TAGACATATA TGAAAGAGAA 
    GTTACGATAT ATGTCTTTTG TTTTATCTGC TCGGCCTTCT TTTTACTGTA 
    CCGTTAGTAA GTATCTACAC TTGCAACGGA GGGGGGAAAC CGTTACCGGG 
    TTTGGTCTTT TTCTTTTTTA CCTTGCACAT AGCGCTTCTT AGAAGCGGGC 
    CTGACGCTTT TGTCCTTGAT GCAGCAAGGC AAAACTCCTG GACTTTTGTC 
    GCTGTTCAGT TGTTTGCTGT GTCTTGTTTG CTACTGAGAA CCTGATGAAC 
    TCGTTACCTG AAAATGGAGA CTTATCGTTA TGCTGT

    Gene models with high sequence identity

    1. AT1G32790.1 [+] show detail - CTC-interacting domain 11
      E-value: 1e-105; Score: 380.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMSmart RNA recognition motif, RNP-1 2.1e-15
    HMMSmart RNA recognition motif, RNP-1 3.1e-10
    superfamily RNA-binding domain, RBD 5.1e-19
    superfamily RNA-binding domain, RBD 5.1e-14
    Gene3D Nucleotide-binding, alpha-beta plait 1.2e-14
    Gene3D Nucleotide-binding, alpha-beta plait 3.5e-10
    ProfileScan RNA recognition motif, RNP-1 13.976
    ProfileScan RNA recognition motif, RNP-1 11.656
    HMMPanther RNA-BINDING PROTEIN 1.2e-16
    HMMPfam RNA recognition motif, RNP-1 2.1e-13
    HMMPfam RNA recognition motif, RNP-1 4.3e-08
    HMMPfam Ataxin-2, C-terminal 3.3e-05

    See the detailed result >

    AT1G32790.1

    Model type
    Protein coding
    Short Description
    CTC-interacting domain 11
    Curator Summary
    RNA-binding protein, putative, similar to RNA-binding protein GB:CAB40027 GI:4539439 from (Arabidopsis thaliana).Member of a family of PAB2 binding domain proteins.
    Computational Description
    CTC-interacting domain 11 (CID11); FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), Ataxin-2, C-terminal (InterPro:IPR009818); BEST Arabidopsis thaliana protein match is: CTC-interacting domain 12 (TAIR:AT4G10610.1); Has 4154 Blast hits to 3448 proteins in 292 species: Archae - 0; Bacteria - 29; Metazoa - 2530; Fungi - 406; Plants - 814; Viruses - 0; Other Eukaryotes - 375 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR