K04340

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K04340

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K04340

Determination of introduced cDNA(s)

  • J013136H16 - Rice Full-length cDNAs - Original: J013136H16

    full reading [+] show sequence

    Nucleotide sequence: J013136H16 - full reading 
    GACTTGCAGC AGCTGCAAAA TAAGCGAAGA TGACTACGCA AGGATTTGCT 
    CCCGTGCTTG CAGTAGCATT GCTCCTTGCA GCATTTCCTG CAGCGGTTCA 
    GTCCATTGGC GTGTGCTACG GCGTGATCGG CAACAACCTG CCGGCGGCGA 
    GCGACGTCGT GAAGCTCTAC AAGTCCAAGG GGATCGACTC CATGCGCATC 
    TACTTCCCGA GGAGCGACAT CCTCCAGGCA CTCACCGGCT CGAACATCGC 
    CCTCACCATG GACGTCGCCA ACGAGAACCT CGCCGCGTTC GCCGCCGACG 
    CCACCGCCGC GGCCGCCTGG GTCAAGCAGA ACGTCCAGGC CTACCCGGGC 
    GTCTCCTTCC GCTACATCGC CGTCGGCAAC GAGGTCACCG GCGACGACAC 
    GGGCAACATC CTCCCGGCCA TGAAGAACCT CAACGCCGCG CTCGCCGCGG 
    CCGGCCTCGG CGGCGTCGGG GTGTCGACGT CGGTGTCCCA GGGCGTGATC 
    GCCAACTCCT ACCCGCCTTC CAACGGCGTC TTCAACGACG ACTACATGTT 
    TGACATCGTG GAGTACCTGG CGAGCACCGG AGCGCCGCTG CTGGTTAACG 
    TGTACCCCTA CTTCGCCTAC GTCGGCGACA CGAAAGACAT CAGCCTCAAC 
    TACGCCACGT TCCAGCCGGG CACGACGGTG ACGGACGACG GCAGCGGGCT 
    GATCTACACG AGCCTCTTCG ACGCGATGGT GGATTCCGTC TACGCCGCGC 
    TGGAGGACGC CGGCGCGCCG GACGTCGGCG TGGTGGTGTC GGAGACCGGG 
    TGGCCGTCGG CCGGTGGGTT CGGGGCCAGC GTGAGCAACG CGCAGACGTA 
    CAACCAGAAG CTTATCAGCC ATGTCCAAGG AGGCACTCCG AAGAGACCAG 
    GGGTGGCGTT GGAGACGTAC GTGTTCGCCA TGTTCAACGA GAACCAGAAG 
    ACCGGGGCTG AGACCGAGAG GCACTTCGGG CTGTTCAACC CCAACAAGTC 
    GCCGTCCTAC AAAATTAGAT TCCACTAGAC AAGAGTGATA TACTAATATT 
    ACATTTGGAT TTGGAATAAG CTAGCTGCTC ATGTCAAATG CAAAACCGCA 
    TGCATGCATG GGAACGTACG GCCAGCATAT AGTTTTGTGG TAATAAGCAC 
    AGCTGCTCAA GATTCAGCAA CGTACGTGTA ACTCTGCCTT GGCACTTTGG 
    CAGTGAATAC TGAACAATAA CGGAATTTAT AACTCTGTTT CCTTG

    Gene models with high sequence identity

    1. AT3G57260.1 [+] show detail - beta-1,3-glucanase 2
      E-value: 4e-72; Score: 268.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Glycoside hydrolase, catalytic core 2.7e-111
    PatternScan Glycoside hydrolase, family 17 0
    HMMPfam Glycoside hydrolase, family 17 6e-132
    Gene3D Glycoside hydrolase, subgroup, catalytic core 2.5e-120

    See the detailed result >

    AT3G57260.1

    Model type
    Protein coding
    Short Description
    beta-1,3-glucanase 2
    Curator Summary
    beta 1,3-glucanase
    Computational Description
    "beta-1,3-glucanase 2" (BGL2); FUNCTIONS IN: glucan 1,3-beta-glucosidase activity, protein binding, cellulase activity, hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: systemic acquired resistance, response to cold; LOCATED IN: apoplast, cell wall, vacuole; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 17 (InterPro:IPR000490), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: beta-1,3-glucanase 3 (TAIR:AT3G57240.1); Has 2232 Blast hits to 2218 proteins in 176 species: Archae - 0; Bacteria - 18; Metazoa - 3; Fungi - 79; Plants - 2105; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR