K04347

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K04347

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K04347

Determination of introduced cDNA(s)

  • J013066C13 - Rice Full-length cDNAs - Original: J013066C13

    full reading [+] show sequence

    Nucleotide sequence: J013066C13 - full reading 
    GATACTATCT CGAAACGATA AAAAAGAGCA CAAATTCTTC TCCTGTTAGT 
    AATTCTGTTC GAATTCCTCT CCTTCCCCAA AAAAGAGTGG AGTTCATCTC 
    CGCCACGCGG GGTTACCGAT AAAAATCCCC CAAATTTCCG CTCCCACCCC 
    GTCGGATTCT CCCCCGAATC CGAGAGTTCA TCGTTTTCCG CCGATTTATT 
    TTATCTGGTT TTGTAAACCA GCAGCCCAAT TGCTCTCTGC CTTCGTCTAC 
    CTCGTGGAAG ATTCCGGGTC AAATTCTAGA CTTTTTGGTG GGTTGCGTGC 
    GAGGGGTGGA GGTTGCTTCG AAGGCAAGCG TTGGGGGGGG GGGGGGGATT 
    GGATTTTGAG GAGGGAGGGA GGGAGTAGGG TTTGGTAATT GGAGGAGGTG 
    GAGTAATGGA GCTCGGGTTG GGGATGGGGA TGGGGCTGGG CGACCCGCCT 
    GCGGACTACG GCTCGATCGC GGCGGTGGGG ATGTTCGTGG CGCTCATCTG 
    CGTCTGCATC GTCGTCGGCC ACCTCCTCGA GGAGAGCCGA TGGATGAACG 
    AGTCCATCAC CGCGCTAATC ATCGGGTTGG GTACTGGAGG AGTGATTTTG 
    ATGGTGTCGA GCTGGAAGCA CTCGCGCATA CTGGTGTTCA GCGAGGATCT 
    CTTCTTCATT TACCTGCTCC CGCCGATCAT ATTCAATGCG GGGTTCCAAG 
    TTAAGAAGAA ACAATTTTTC CGCAACTTCA TGACTATTAC GTTGTTTGGT 
    GCGATTGGGA CCCTAATCTC TTTCAGTGTA ATTTCCCTCG GTTCTCTAGG 
    ACTAATATCA AGGCTGAACA TAGGTTCCCT TGATCTTGGA GATTATCTTG 
    CACTTGGGGC AATATTCTCG GCAACAGACT CTGTATGCAC CTTGCAGGTT 
    TTGAACCAAG ATGAAACACC CTTCTTGTAC AGCCTGGTTT TCGGGGAAGG 
    TGTTGTCAAT GATGCAACAT CAGTTGTGCT ATTCAACGCA ATGCAGAACT 
    TTGATCTTGC AAATTTCAGC AGTGTTAAAT TCTTGCAATT CATTGGCAAT 
    TTTCTTTATC TGTTTGCCAC GAGCACCTTT CTTGGAGTTG CTGCTGGACT 
    TCTCAGTGCT TATATCACAA AAAAGCTGTA CTTCGGCAGG CATTCCACTG 
    ATCGTGAAGT TTCTATTATG ATGCTCATGG CTTACTTGTC TTACATGCTT 
    GCTGAATTGC TTGATTTGAG TGGTATTCTT ACGGTGTTCT TCTGTGGTAT 
    TGTAATGTCG CACTATACCT GGCATAATGT AACAGAGAGT TCCAGGGTCA 
    CAACCAAGCA CGCCTTCGCC ACATTGTCAT TTATCGCCGA GACATTTCTA 
    TTTCTTTATG TTGGTATGGA TGCATTGGAT ATGGAGAAGT GGAAGATTGT 
    CAGTGAAACA TTCAGCCCAA TGAAATCTAT TGCTTTGAGC TCCACTATTT 
    TGTTCTTGAT GCTGGTCGCA AGAGCTGCTT TTGTTTTCCC ACTATCTTTT 
    TTGGCAAATT TGACCAAAAA AACTGAAGAG GGAAAGATCT CTATTAAGCA 
    GCAAGTTATT ATTTGGTGGG CGGGTCTGAT GAGAGGTGCT GTGTCCATTG 
    CATTGGCCTA CAACAAGTTC ACAAGGTCAG GCCACACTCA ACTCCCTAGT 
    AATGCTATCA TGATCACTAG TACAATCACT GTTGTTCTTT TCAGCACGAT 
    GGTCTTTGGG CTCCTGACTA AGCCATTAAT CAGACTCCTA ATTCCAGCAA 
    GACACCTCAA CCGGGAATCG AGTGCGCTTT CGGATCCACC TAGCCCGAAA 
    TCCTTCCTTG ATCCACTGAT CCTGAACGGT TCCGATGTCG ATCCTGAGAT 
    TGGTGTGGGC ATTCGCCGAC CGACAAGCCT CCGACTTCTC CTAGCAAGCC 
    CGACACAGTC GGTCCACCAT TACTGGCGCA AGTTCGACAA CGCCTTCATG 
    AGGCCGGTGT TTGGGGGCCG AGGATTCGTC CCCTTCGTCC CCGGCTCACC 
    AACTGAAAGG AGTGTGCCAT TACTCCAGGG AAATGAGAAC TAGAAAACTT 
    TTTCAAAGGA GCGTGCCATT ACTCCAGGGA AATGAGAGCT AGAAAACATA 
    AACAAAGGTT GTGTAAATCT GAGGTAGAAG AACAATCAGC AAACACAGTT 
    TCTGTAAATT TATCTGAGGT AGTAACAGCG TTCTTGGTAG CTGTGGTACA 
    TGCTGATGTG TTATGTACCT AATATTGTAG ATAGCATGGA TGTATATATA 
    TAAAGCCTCT GTAGTTTAGC AAGAAATGGT GCTGAAAATT TTGCCACGAT 
    TTATACAATA TGGTATGATT TTTGCATTC

    Gene models with high sequence identity

    1. AT3G05030.1 [+] show detail - sodium hydrogen exchanger 2
      E-value: 1e-179; Score: 627.00

     

    InterPro Scan Digest

    Program Description E-value
    FPrintScan Na+/H+ exchanger, conserved region 2.4e-11
    FPrintScan Na+/H+ exchanger, conserved region 2.4e-11
    FPrintScan Na+/H+ exchanger, conserved region 2.4e-11
    FPrintScan Na+/H+ exchanger, conserved region 2.4e-11
    HMMTigr Na+/H+ exchanger, subfamily 3.7e-20
    HMMPfam Cation/H+ exchanger 1.4e-61
    HMMPanther Na+/H+ exchanger, isoforms 1-4, conserved region 4.2e-152
    HMMPanther Cation/H+ exchanger, conserved region 4.2e-152

    See the detailed result >

    AT3G05030.1

    Model type
    Protein coding
    Short Description
    sodium hydrogen exchanger 2
    Curator Summary
    member of Sodium proton exchanger family
    Computational Description
    sodium hydrogen exchanger 2 (NHX2); FUNCTIONS IN: sodium:hydrogen antiporter activity, sodium ion transmembrane transporter activity; INVOLVED IN: cation transport, sodium ion transport, regulation of pH, transmembrane transport; LOCATED IN: endomembrane system, integral to membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Na+/H+ exchanger, subfamily (InterPro:IPR004709), Cation/H+ exchanger, conserved region (InterPro:IPR018422), Cation/H+ exchanger (InterPro:IPR006153), Na+/H+ exchanger, isoforms 1-4, conserved region (InterPro:IPR018407); BEST Arabidopsis thaliana protein match is: Na+/H+ exchanger 1 (TAIR:AT5G27150.1); Has 5612 Blast hits to 5606 proteins in 1611 species: Archae - 51; Bacteria - 3727; Metazoa - 852; Fungi - 131; Plants - 439; Viruses - 0; Other Eukaryotes - 412 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR