K04405

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K04405

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
rosette leaf (PO:0000014)
  • present in greater numbers in organism (PATO:0000470)
    (Rosette leaf::Number::many)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K04405

Determination of introduced cDNA(s)

  • J033044E02 - Rice Full-length cDNAs - Original: J033044E02

    full reading [+] show sequence

    Nucleotide sequence: J033044E02 - full reading 
    GATTTCCGCC TCTCTCTCTC CCCCCCATCT CTACAGAGGC AGCAGCAGCG 
    GCGGCGGCGA CAAGGGAAGC CGATGGCCAT GGCGACCTCC ACCTTCTCCC 
    CCCCGGCCTC GCAGCTCTCC CTCACCGCCG CCGCCTCCAC CCGGGCCCCG 
    ACCTCCTCAC CCTCTCCTCC CCGCGCCTCC GCGCCGGCCT CCGCCTCGCC 
    CGCGCCGCCG CCGGGGAGGC CCCCGTGGAG ACTGTCGAGG CGCCGCCGAG 
    CAAGCCGGAG GCCGAGCCGT CCCCCGCTGC GTCCAACGGG GCCGCCGTCA 
    AGGCCGAGAA GCCGCCGGCG GCGGCGGCGG CGCCCCCGCT GCCCAAGTTC 
    CGGGACTCGA GGTGGGTCAA CGGGACGTGG GACCTCAGGC AGTTCGAGAA 
    GGGCGGCGCC GTCGACTGGG ACGCCGTCAT AGACGCCGAG GCCAGGAGAA 
    GGAAATGGCT TGAAGATTGT CCAGAGGCAA CTAGCCCTGA CGAGGCCGTT 
    GTCTTCGATA CTTCAATCAT ACCGTGGTGG GCATGGATGA AGCGTTTCCA 
    TCTCCCTGAA GCCGAGAAGC TAAATGGCCG TGCTGCCATG ATTGGCTTCT 
    TCATGGCATA CTTTGTTGAT AGCTTGACCG GCGTGGGGCT TGTCGACCAG 
    ATGGGCAACT TCTTCTGCAA AACCCTACTG TTTGTTGCTG TGGCTGGTGT 
    GCTGCTGGTC AGGAAAAACG AGGACATAGA GACAGTGAAG AAGCTCATCG 
    ATGAGACGAC GTTCTACGAC AAGCAATGGC AGGCAACCTG GCAAGATGAG 
    TCCCCTTCTC AGCCCAAGAA ATAGCTCTGA AGTGGAATCT GAATCTGAAT 
    CCTCCCTATG TTGTATTGTA TCACTTCTTT TTGCAGCCCC TTTCTCAACC 
    CATTTATTAG TGAGGCTCAG TACATTTTGA TGATCTTAAT ACCTATGACG 
    TCTTGTAAAA AGTACGAACT CGTTTCTGTG CTAGAGGTTA ACGTTGCTGC 
    GGGTTACTTG GTTG

    Gene models with high sequence identity

    1. AT4G17600.1 [+] show detail - Chlorophyll A-B binding family protein
      E-value: 5e-65; Score: 244.00

     

    InterPro Scan Digest

    See the detailed result >

    AT4G17600.1

    Model type
    Protein coding
    Short Description
    Chlorophyll A-B binding family protein
    Curator Summary
    Encodes Lil3:1 (light-harvesting-like) protein. Belongs to the Lhc super-gene family encodes the light-harvesting chlorophyll a/b-binding (LHC) proteins that constitute the antenna system of the photosynthetic apparatus. A generic LHC motif is present in Lil3:1.
    Computational Description
    LIL3:1; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: Chlorophyll A-B binding family protein (TAIR:AT5G47110.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR

  • J023011G21 - Rice Full-length cDNAs - Original: J023011G21

    full reading [+] show sequence

    Nucleotide sequence: J023011G21 - full reading 
    GTAGGAATTG AAGGATGATG CTGCTCGCCA AGGAGTTGGG CCTGTCGCCG 
    CCGGCAGCGG TCACTCCTCG CCGGAGGCCG CCGCCTGCCA GGGTCCCCGC 
    CTCTCCCTCC GGTGGCTCGC CCGTGGCCGT CGGAGACCTC TGGCTCCGGA 
    CCAAAGGAGC CGGAGGAGGA GGAGACGGGT TCGGGAGCCA CAGCCACGAG 
    AGCGAGATGG ATTTGGCCAT GCTCGTCACC GACTTCCTTG AGAACGGCGG 
    CACCGGAGGC GCCGATTCCC GCGCCAGCAG CGACTCCGAC TCCGCCCTCT 
    CCGACCACCT CGCCGATAAC ATTTCTATCT ACAAGCAAGG CGGCGATGAG 
    AAAGAAAACG AGCTACTCTC CATGGTCCAC TCGCTGTTAT TCTCGATCCA 
    TGAGTCAGAC CTTCTGGCTT TCAAAAGAGG TCAATGCAGT GCCAGCTGCA 
    TCCGTCATTT ACTTGTGAAG CTCTTGAGAT ATTCGGGATA TGATGCAGCT 
    GTTTGCGTAT CAAAATGGCA GGGATTCGAC AAGATACCTG GAGGTGATCA 
    TGAGTATATC GATGTCATCA TGAATAGTGA TACTGAATAT CGTCTGATCA 
    TTGATATCGA CTTCAGGAGC CACTTTGAAA TAGCCAGGGC TGTTGATTCT 
    TATGACAGTC TGCTCAATTC ACTTCCGGTG GTCTATGTTG GCACTCTTCC 
    CAGACTGAAA CAGTTCTTGC ATGTTATGGT AGATGCTGCA AAATGGTCGC 
    TTAAGCAGAA CTCTATGCCT CTGCCTCCTT GGAGATCCTT GCCTTATCTC 
    CAAGCAAAAT GGCATTCCAA GTATGAGAGG ATAGACCTGC ACATTGAGCA 
    AGACTTCCGC AGCACAGCTT CAGATCACGC ACTATGCATT GGGCACCTCA 
    AAAGGCTGAA ATCCTCCCTG CAGTCAGAAC TGGATACCGA AAGGTTGCTT 
    ATGATGCCAA TCAAGACTGA TATGAAGCGG AGGGCAAAGT TTGAGAGGCG 
    GCGGCGCCGT TCCTTGCTCA GCTTCTGATT CATATTTGTG CTTCTTGGAT 
    ACTGAAGTAC TGAGAGAAGG AAGAATAGCT TCCCATACTT TTTTTCTGTG 
    ATAAAAGGAG TTCTTTTTAA CAGTTTTGGA CATACAAGGG AAATAGATGA 
    CGGGTACTAA CAAGGCAGGA GAGTTGAGAG AGTGTGCCAG CTTTTTTTTG 
    AAGGCATATA CAAAAACATA AAATTCTTTT TGGATTTCAT TTTTGTTCTT 
    CCGGCGATGA TGGCTGCTAG TGGTTAATCT GCTGCATACC ATGTACAATG 
    ATGAGTGTTT ACAGCGTTTT TTTCCTCCTT ATATTCATTC TTTTATCACA 
    TAGATGGACC TTGTGTATTT TGAACACACT TCCTTTTCCC CCTTGTTGTA 
    GAGTGGACAT GATACATGCT GTTGGTTCCC TTTGTAATAA TAGAATGTTC 
    AAGCTTAGTT ACACTCTGTT TTGAAATGAT ATACTCTAAA ATGTTCTGGC 
    TT

    Gene models with high sequence identity

    1. AT2G39650.1 [+] show detail - Protein of unknown function (DUF506)
      E-value: 1e-67; Score: 254.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Protein of unknown function DUF506, plant 1.4e-60
    HMMTigr Protein of unknown function DUF506, plant 7.7e-71

    See the detailed result >

    AT2G39650.1

    Model type
    Protein coding
    Short Description
    Protein of unknown function (DUF506)
    Computational Description
    Protein of unknown function (DUF506) ; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF506, plant (InterPro:IPR006502); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF506) (TAIR:AT2G38820.2); Has 395 Blast hits to 393 proteins in 24 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 393; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR