K04425

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T1
	cauline leaf (PO:0000013)	desaturated green (PATO:0001272) (Cauline leaf::Color::pale)
	rosette leaf (PO:0000014)	abnormal (PATO:0000460) (Rosette leaf::Others)
	stem (PO:0009047)	decreased thickness (PATO:0000592) (Stem::Shape::thin) abnormal (PATO:0000460) (Stem::Others)
T2	seed (PO:0009010)	increased length (PATO:0000573) (Seed::Shape::long)

Invisible phenotypes

Photosynthesis::Others::chlorophyll fluorescence

Original: K04425

Determination of introduced cDNA(s)

J033120D06 - Rice Full-length cDNAs - Original: J033120D06

full reading [+] show sequence

GTCCGCACGA ACAACAACCA CCACCAGCAC CTCCTCCTCC GCCGCCGACG 
CCGACTCCTC CCTCCAAGCT TTCCCCACCG TGGCGTCGTC GTCCGTCTTC 
GCTGGCCTCG CGCAGGCGCC GGAGGACCCC ATCCTCGGGG TGACGGTCGC 
GTACAACAAG GATCCCAGCC CCGTGAAGGT CAATCTCGGC GTCGGCGCCT 
ACCGGACCGA GGAAGGGAAG CCCCTGGTGC TGAATGTGGT CAGGCGCGCT 
GAGCAGATGC TGATCAACAA CCCGTCACGT GTTAAGGAGT ATTTGCCGAT 
CACTGGACTG GCCGATTTCA ATAAGCTGAG TGCTAAGCTT ATTTTTGGTG 
CTGACAGTCC TGCCATTCAA GAGAATAGGG TGGCTACAGT TCAGTGCTTG 
TCAGGAACTG GTTCTTTAAG GGTGGGAGGT GAATTTCTTG CAAGGCATTA 
TCATGAACGC ACTATATACA TCCCACAGCC AACCTGGGGG AATCACCCCA 
AAGTGTTCAC TTTAGCTGGC CTGACTGTTA GGAGTTACCG CTACTATGAT 
CCTGCAACCC GTGGACTGGA TTTCCAAGGG CTGTTAGAAG ATCTCGGTTC 
AGCTCCTTCA GGTGCAATTG TACTGCTTCA TGCTTGTGCC CACAACCCTA 
CTGGAGTAGA CCCAACTTTG GACCAGTGGG AACAGATCAG GCAGTTGATG 
AGATCAAAAG CATTGCTGCC ATTCTTTGAT AGCGCTTATC AGGGATTTGC 
AAGTGGAAGT CTTGACCAAG ATGCTCAATC AGTGCGCATG TTTGTTGCTG 
ATGGTGGTGA ATTGCTCATG GCTCAGAGCT ACGCTAAGAA CATGGGATTG 
TATGGAGAGC GTGTCGGTGC TTTAAGCATA GTTTGTGGAA GTGCTGATGT 
AGCTGTCAGG GTTGAAAGTC AACTTAAGCT TGTAATTAGG CCTATGTATT 
CAAACCCTCC TATTCATGGT GCATCTATCG TGGCTACCAT ACTTAAGGAC 
AGTGCAATGT TCAATGAATG GACTGTGGAG CTGAAGGGCA TGGCTGATAG 
GATTATTAGC ATGAGGCAAC AGCTTTTTGA TGCTCTGAAA ACGAGAGAAA 
CTCCTGGAGA CTGGAGTCAC ATCATTAAGC AGATCGGAAT GTTCACTTTC 
ACTGGGCTCA ACAGTGATCA AGTGGCTTTC ATGAGGCAGG AATACCACAT 
TTACATGACA TCTGATGGGA GGATCAGTAT GGCTGGTTTG AGCGGGAGGA 
CCATTCCGCA TCTTGCAGAT GCAATCCATG CCGCAGTCAC AAAACTGAAG 
TGAATGATGG TAGCATAGCA GCTCCCTCCA AGAATAACAT CTTAAAACCA 
TCCGCAGCAG TGTTCTGAGG ATTCAGACAG TGATGTTTGC TGGCTGAGCA 
CATCCTGGAA GTTTCCTTGT AATAGACTCG TGTGACTTGC TTTTGGGAGC 
AGTTTTGTAC CAGTGGATTC AGAAAAAGTG GTGATTTCGA ATCACCTAAT 
AAGCTCCATC GGTGATGCTT TTACC

Gene models with high sequence identity

AT5G11520.1 [+] show detail - aspartate aminotransferase 3
E-value: 0; Score: 696.00

InterPro Scan Digest

Program	Description	E-value
FPrintScan	Aspartate/tyrosine aminotransferase	1.6e-38
FPrintScan	Aspartate/tyrosine aminotransferase	1.6e-38
FPrintScan	Aspartate/tyrosine aminotransferase	1.6e-38
FPrintScan	Aspartate/tyrosine aminotransferase	1.6e-38
PatternScan	Aminotransferases, class-I, pyridoxal-phosphate-binding site	0
Gene3D	Pyridoxal phosphate-dependent transferase, major region, subdomain 1	3.6e-111
HMMPanther	Aspartate/other aminotransferase	2e-264
superfamily	Pyridoxal phosphate-dependent transferase, major domain	6.9e-121
HMMPfam	Aminotransferase, class I/II	4.6e-97

See the detailed result >

AT5G11520.1

Model type: Protein coding
Short Description: aspartate aminotransferase 3
Curator Summary: Encodes the chloroplastic isozyme of aspartate aminotransferase. Involved in aspartate biosynthesis and nitrogen metabolism. mRNA is expressed in senescing leaves.
Computational Description: aspartate aminotransferase 3 (ASP3); FUNCTIONS IN: L-aspartate:2-oxoglutarate aminotransferase activity; INVOLVED IN: leaf senescence, nitrogen compound metabolic process; LOCATED IN: peroxisome, plastid, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Aminotransferase, class I/classII (InterPro:IPR004839), Pyridoxal phosphate-dependent transferase, major domain (InterPro:IPR015424), Aminotransferases, class-I, pyridoxal-phosphate-binding site (InterPro:IPR004838), Aspartate/other aminotransferase (InterPro:IPR000796), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421); BEST Arabidopsis thaliana protein match is: aspartate aminotransferase 2 (TAIR:AT5G19550.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link: InterPro Scan - TAIR

J013094L23 - Rice Full-length cDNAs - Original: J013094L23

full reading [+] show sequence

GCTATCCTCC ACCTCGGCTT ATCTCCTCCC CCCTCCCCAC CACCACCACC 
ACCACCATGG CCACAGCCGC TTCCCTCTCC GCCACCGCCT CCTCCCTCCT 
CGCCCCCGCC CCCGCCACCA CCGGCGCCGC GGCGGCGCAG TGCTGCTCCT 
CCTCGTCCAC CGCGCTGTTC CCCACCCCCG TCCCGTCGCT GCGCGCCTAC 
TACCCGCGCC TGCTCCTCGC GTTCCGCCGC CCCGCCGTCG CCGCCGTCGC 
AGACCCGCAG GGCGCCGTGC TCGAGGAGGA GCAGGGGGAG CAGCAGGACG 
AGGGGCAGGA GCAGTACGAC GACGACGACT ACGACGACGG GTACGAGGGC 
GGACGCGGCC CCGCGTTCAC GCCCCCCACC CGCCCGCGCA CCGGCAAGGC 
CGCCCTTCCG CTCAAGCGCG ACCGCACGAG GTCGAAGCGA TTCCTGGAGA 
TACAGAAGCT GAGGGAGAGC AAGAAGGAGC ACGACGTGCC CACGGCCATC 
TCGCTGGTGA AGCAGATGGC CAGCGCCCGA TTCGTCGAGT CCGCTGAGGC 
GCACTTCCGC ATGAACCTCG ACCCCAAGTA CAACGACCAG CAGCTCCGCG 
CCACGGTTAA TTTGCCCAAG GGGACGGGCC AGTCGGTGAA GATTGCGGTC 
CTCACACAAG GTGAGAAGAT AGATCAAGCA AGAGCTGCAG GAGCTGATAT 
TGTCGGTGGA GATGACCTGA TTGACCAAAT AAAAGGAGGA TTTATGGAAT 
TTGACAAGCT GATTGCATCA CCTGATATGA TGCCTAAGGT CGCCGGATTG 
GGAAAGATTC TAGGACCGAG AGGACTTATG CCTAACCCCA AAGCTGGGAC 
TGTTTCTCCA AACATAACTC AGGCTATCGA AGAGTTCAAG AAAGGTAAAG 
TTGAATACAG AGTTGACAAG ACAGGGATTG TTCACATTCC CTTTGGGAAG 
GTTGATTTTC CTGAAGAAGA CCTTATTGCA AACTTCATGG CTGTTGTTCG 
CTCTGTCGAA AGGAACAAAC CATCTGGTGC AAAGGGGATA TACTGGAAAA 
CGGCATACTT ATGCTCATCA ATGGGGCCTT CAATCAAGTT AAACATCAAA 
GAAATGCTTG ACTATGGCTC AGAATCATCA GACTAAATGC CACGAAAAGC 
ACCAGTTAAG AAATCTGGTG TTTGCTACCA CCTTCACAAA ATTAACCATC 
CACCCTTAGC GATAAATGAA CCGGGAAACA TGGTGGGGGA AGGCAAGGGA 
GGTGCTTAGG TACAGTTTTT TTTTCAGTCT CACCTGCATC CATCCAGCAG 
TTACACGATG CCCAAGTCGA CGAAGGGGTG ATATTGTTGG CCATTTGTAC 
TTACGAGCAA ATTATTTACG GACTTATAGA TGTGTTTTCT GAGATGTTTG 
TTGTAATGAT CAATATTTTG TCCATAGTC

Gene models with high sequence identity

AT3G63490.1 [+] show detail - Ribosomal protein L1p/L10e family
E-value: 5e-115; Score: 411.00

InterPro Scan Digest

Program	Description	E-value
PatternScan	Ribosomal protein L1	0
superfamily	Ribosomal protein L1	1.1e-75
HMMTigr	Ribosomal protein L1, bacterial-type	1.1e-132
HMMPfam	Ribosomal protein L1	1.1e-76
Gene3D	Ribosomal protein L1, 2-layer alpha/beta-sandwich	1.2e-41
HMMPanther	50S RIBOSOMAL PROTEIN L1P	2e-92
HMMPanther	RIBOSOMAL PROTEIN L7AE FAMILY MEMBER	2e-92

See the detailed result >

AT3G63490.1

Model type: Protein coding
Short Description: Ribosomal protein L1p/L10e family
Computational Description: Ribosomal protein L1p/L10e family; FUNCTIONS IN: structural constituent of ribosome, RNA binding; INVOLVED IN: translation, RNA processing; LOCATED IN: in 6 components; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L1 (InterPro:IPR002143), Ribosomal protein L1, bacterial-type (InterPro:IPR005878), Ribosomal protein L1, 2-layer alpha/beta-sandwich (InterPro:IPR016094); BEST Arabidopsis thaliana protein match is: Ribosomal protein L1p/L10e family (TAIR:AT2G42710.1); Has 9168 Blast hits to 9162 proteins in 2816 species: Archae - 276; Bacteria - 5341; Metazoa - 152; Fungi - 277; Plants - 105; Viruses - 0; Other Eukaryotes - 3017 (source: NCBI BLink).
Link: InterPro Scan - TAIR