K04425

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K04425

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
cauline leaf (PO:0000013)
  • desaturated green (PATO:0001272)
    (Cauline leaf::Color::pale)
rosette leaf (PO:0000014)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
stem (PO:0009047)
  • decreased thickness (PATO:0000592)
    (Stem::Shape::thin)
  • abnormal (PATO:0000460)
    (Stem::Others)
T2 seed (PO:0009010)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Original: K04425

Determination of introduced cDNA(s)

  • J033120D06 - Rice Full-length cDNAs - Original: J033120D06

    full reading [+] show sequence

    Nucleotide sequence: J033120D06 - full reading
    GTCCGCACGA ACAACAACCA CCACCAGCAC CTCCTCCTCC GCCGCCGACG 
    CCGACTCCTC CCTCCAAGCT TTCCCCACCG TGGCGTCGTC GTCCGTCTTC
    GCTGGCCTCG CGCAGGCGCC GGAGGACCCC ATCCTCGGGG TGACGGTCGC
    GTACAACAAG GATCCCAGCC CCGTGAAGGT CAATCTCGGC GTCGGCGCCT
    ACCGGACCGA GGAAGGGAAG CCCCTGGTGC TGAATGTGGT CAGGCGCGCT
    GAGCAGATGC TGATCAACAA CCCGTCACGT GTTAAGGAGT ATTTGCCGAT
    CACTGGACTG GCCGATTTCA ATAAGCTGAG TGCTAAGCTT ATTTTTGGTG
    CTGACAGTCC TGCCATTCAA GAGAATAGGG TGGCTACAGT TCAGTGCTTG
    TCAGGAACTG GTTCTTTAAG GGTGGGAGGT GAATTTCTTG CAAGGCATTA
    TCATGAACGC ACTATATACA TCCCACAGCC AACCTGGGGG AATCACCCCA
    AAGTGTTCAC TTTAGCTGGC CTGACTGTTA GGAGTTACCG CTACTATGAT
    CCTGCAACCC GTGGACTGGA TTTCCAAGGG CTGTTAGAAG ATCTCGGTTC
    AGCTCCTTCA GGTGCAATTG TACTGCTTCA TGCTTGTGCC CACAACCCTA
    CTGGAGTAGA CCCAACTTTG GACCAGTGGG AACAGATCAG GCAGTTGATG
    AGATCAAAAG CATTGCTGCC ATTCTTTGAT AGCGCTTATC AGGGATTTGC
    AAGTGGAAGT CTTGACCAAG ATGCTCAATC AGTGCGCATG TTTGTTGCTG
    ATGGTGGTGA ATTGCTCATG GCTCAGAGCT ACGCTAAGAA CATGGGATTG
    TATGGAGAGC GTGTCGGTGC TTTAAGCATA GTTTGTGGAA GTGCTGATGT
    AGCTGTCAGG GTTGAAAGTC AACTTAAGCT TGTAATTAGG CCTATGTATT
    CAAACCCTCC TATTCATGGT GCATCTATCG TGGCTACCAT ACTTAAGGAC
    AGTGCAATGT TCAATGAATG GACTGTGGAG CTGAAGGGCA TGGCTGATAG
    GATTATTAGC ATGAGGCAAC AGCTTTTTGA TGCTCTGAAA ACGAGAGAAA
    CTCCTGGAGA CTGGAGTCAC ATCATTAAGC AGATCGGAAT GTTCACTTTC
    ACTGGGCTCA ACAGTGATCA AGTGGCTTTC ATGAGGCAGG AATACCACAT
    TTACATGACA TCTGATGGGA GGATCAGTAT GGCTGGTTTG AGCGGGAGGA
    CCATTCCGCA TCTTGCAGAT GCAATCCATG CCGCAGTCAC AAAACTGAAG
    TGAATGATGG TAGCATAGCA GCTCCCTCCA AGAATAACAT CTTAAAACCA
    TCCGCAGCAG TGTTCTGAGG ATTCAGACAG TGATGTTTGC TGGCTGAGCA
    CATCCTGGAA GTTTCCTTGT AATAGACTCG TGTGACTTGC TTTTGGGAGC
    AGTTTTGTAC CAGTGGATTC AGAAAAAGTG GTGATTTCGA ATCACCTAAT
    AAGCTCCATC GGTGATGCTT TTACC

    Gene models with high sequence identity

    1. AT5G11520.1 [+] show detail - aspartate aminotransferase 3
      E-value: 0; Score: 696.00

     

    InterPro Scan Digest

    Program Description E-value
    FPrintScan Aspartate/tyrosine aminotransferase 1.6e-38
    FPrintScan Aspartate/tyrosine aminotransferase 1.6e-38
    FPrintScan Aspartate/tyrosine aminotransferase 1.6e-38
    FPrintScan Aspartate/tyrosine aminotransferase 1.6e-38
    PatternScan Aminotransferases, class-I, pyridoxal-phosphate-binding site 0
    Gene3D Pyridoxal phosphate-dependent transferase, major region, subdomain 1 3.6e-111
    HMMPanther Aspartate/other aminotransferase 2e-264
    superfamily Pyridoxal phosphate-dependent transferase, major domain 6.9e-121
    HMMPfam Aminotransferase, class I/II 4.6e-97

    See the detailed result >

    AT5G11520.1

    Model type
    Protein coding
    Short Description
    aspartate aminotransferase 3
    Curator Summary
    Encodes the chloroplastic isozyme of aspartate aminotransferase. Involved in aspartate biosynthesis and nitrogen metabolism. mRNA is expressed in senescing leaves.
    Computational Description
    aspartate aminotransferase 3 (ASP3); FUNCTIONS IN: L-aspartate:2-oxoglutarate aminotransferase activity; INVOLVED IN: leaf senescence, nitrogen compound metabolic process; LOCATED IN: peroxisome, plastid, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Aminotransferase, class I/classII (InterPro:IPR004839), Pyridoxal phosphate-dependent transferase, major domain (InterPro:IPR015424), Aminotransferases, class-I, pyridoxal-phosphate-binding site (InterPro:IPR004838), Aspartate/other aminotransferase (InterPro:IPR000796), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421); BEST Arabidopsis thaliana protein match is: aspartate aminotransferase 2 (TAIR:AT5G19550.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR
  • J013094L23 - Rice Full-length cDNAs - Original: J013094L23

    full reading [+] show sequence

    Nucleotide sequence: J013094L23 - full reading
    GCTATCCTCC ACCTCGGCTT ATCTCCTCCC CCCTCCCCAC CACCACCACC 
    ACCACCATGG CCACAGCCGC TTCCCTCTCC GCCACCGCCT CCTCCCTCCT
    CGCCCCCGCC CCCGCCACCA CCGGCGCCGC GGCGGCGCAG TGCTGCTCCT
    CCTCGTCCAC CGCGCTGTTC CCCACCCCCG TCCCGTCGCT GCGCGCCTAC
    TACCCGCGCC TGCTCCTCGC GTTCCGCCGC CCCGCCGTCG CCGCCGTCGC
    AGACCCGCAG GGCGCCGTGC TCGAGGAGGA GCAGGGGGAG CAGCAGGACG
    AGGGGCAGGA GCAGTACGAC GACGACGACT ACGACGACGG GTACGAGGGC
    GGACGCGGCC CCGCGTTCAC GCCCCCCACC CGCCCGCGCA CCGGCAAGGC
    CGCCCTTCCG CTCAAGCGCG ACCGCACGAG GTCGAAGCGA TTCCTGGAGA
    TACAGAAGCT GAGGGAGAGC AAGAAGGAGC ACGACGTGCC CACGGCCATC
    TCGCTGGTGA AGCAGATGGC CAGCGCCCGA TTCGTCGAGT CCGCTGAGGC
    GCACTTCCGC ATGAACCTCG ACCCCAAGTA CAACGACCAG CAGCTCCGCG
    CCACGGTTAA TTTGCCCAAG GGGACGGGCC AGTCGGTGAA GATTGCGGTC
    CTCACACAAG GTGAGAAGAT AGATCAAGCA AGAGCTGCAG GAGCTGATAT
    TGTCGGTGGA GATGACCTGA TTGACCAAAT AAAAGGAGGA TTTATGGAAT
    TTGACAAGCT GATTGCATCA CCTGATATGA TGCCTAAGGT CGCCGGATTG
    GGAAAGATTC TAGGACCGAG AGGACTTATG CCTAACCCCA AAGCTGGGAC
    TGTTTCTCCA AACATAACTC AGGCTATCGA AGAGTTCAAG AAAGGTAAAG
    TTGAATACAG AGTTGACAAG ACAGGGATTG TTCACATTCC CTTTGGGAAG
    GTTGATTTTC CTGAAGAAGA CCTTATTGCA AACTTCATGG CTGTTGTTCG
    CTCTGTCGAA AGGAACAAAC CATCTGGTGC AAAGGGGATA TACTGGAAAA
    CGGCATACTT ATGCTCATCA ATGGGGCCTT CAATCAAGTT AAACATCAAA
    GAAATGCTTG ACTATGGCTC AGAATCATCA GACTAAATGC CACGAAAAGC
    ACCAGTTAAG AAATCTGGTG TTTGCTACCA CCTTCACAAA ATTAACCATC
    CACCCTTAGC GATAAATGAA CCGGGAAACA TGGTGGGGGA AGGCAAGGGA
    GGTGCTTAGG TACAGTTTTT TTTTCAGTCT CACCTGCATC CATCCAGCAG
    TTACACGATG CCCAAGTCGA CGAAGGGGTG ATATTGTTGG CCATTTGTAC
    TTACGAGCAA ATTATTTACG GACTTATAGA TGTGTTTTCT GAGATGTTTG
    TTGTAATGAT CAATATTTTG TCCATAGTC

    Gene models with high sequence identity

    1. AT3G63490.1 [+] show detail - Ribosomal protein L1p/L10e family
      E-value: 5e-115; Score: 411.00

     

    InterPro Scan Digest

    Program Description E-value
    PatternScan Ribosomal protein L1 0
    superfamily Ribosomal protein L1 1.1e-75
    HMMTigr Ribosomal protein L1, bacterial-type 1.1e-132
    HMMPfam Ribosomal protein L1 1.1e-76
    Gene3D Ribosomal protein L1, 2-layer alpha/beta-sandwich 1.2e-41
    HMMPanther 50S RIBOSOMAL PROTEIN L1P 2e-92
    HMMPanther RIBOSOMAL PROTEIN L7AE FAMILY MEMBER 2e-92

    See the detailed result >

    AT3G63490.1

    Model type
    Protein coding
    Short Description
    Ribosomal protein L1p/L10e family
    Computational Description
    Ribosomal protein L1p/L10e family; FUNCTIONS IN: structural constituent of ribosome, RNA binding; INVOLVED IN: translation, RNA processing; LOCATED IN: in 6 components; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L1 (InterPro:IPR002143), Ribosomal protein L1, bacterial-type (InterPro:IPR005878), Ribosomal protein L1, 2-layer alpha/beta-sandwich (InterPro:IPR016094); BEST Arabidopsis thaliana protein match is: Ribosomal protein L1p/L10e family (TAIR:AT2G42710.1); Has 9168 Blast hits to 9162 proteins in 2816 species: Archae - 276; Bacteria - 5341; Metazoa - 152; Fungi - 277; Plants - 105; Viruses - 0; Other Eukaryotes - 3017 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR