K04503

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K04503

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K04503

Determination of introduced cDNA(s)

  • J023042N13 - Rice Full-length cDNAs - Original: J023042N13

    full reading [+] show sequence

    Nucleotide sequence: J023042N13 - full reading
    GATCCGAAAG CAAAAGCGAC TCGTCACAGC TCAAACAAGT CAAGAGCGAA 
    TAGTTCTTGC TGATCTGTTG TTTGATTACT TTAGTTCTCG AGAGGCTTTA
    GCTGAATCCA TCGATCGATC ATGGAGGATG AGAGGAACAC GGAGAGCCAC
    CAGGGTGGCG AGGCTGCAGA GCAGGTGGAG GTGAAGGACA GGGGCCTCTT
    CGACAACCTC CTTGGCAGGA AGAAGGACGA TCAGCCGGAG GAGAAGAAGC
    ATGAGGAGGA GCTTGTCACC GGCATGGAGA AGGTCTCCGT GGAAGAGCCA
    AAGAAGGAGG AGCACCACGC CGAGGGCGAG AAGAAGGAGA GCCTCCTCTC
    CAAGCTGCAC CGATCCAGCT CCAGCTCCAG CTCGTCGAGT GATGAGGAAG
    AGGAGGTGAT CGATGACAAC GGCGAGGTGG TCAAGAGGAA GAAGAAGAAG
    GGGCTCAAGG AGAAGATCAA GGAGAAGCTG CCCGGCCACA AGGACCATGC
    CGGTGAGCAT GCTCCTCCGC CCGCGGCGAC GGGCTTCCCC GCGCCGGCTC
    CGCCTGCATC CGTGGTGACG GCCGCGCCCA CGCCAGCTCC TGCTCCCGTG
    GTGACTCACG GCGATCACCA CCACGACACC GCCGTCCCCG TGGAGAAGAT
    CGAGGGTGAT CACGCCAAGA CGGAGGCGAC CCTGCCACGT GCACCCGAGG
    AGGAGAAGAA GGGCTTCCTC GACAAGATCA AGGAGAAGCT GCCCGGCGGC
    CACAAGAAGC CGGAAGACGC AACTGCTGTG CCGCCGCCGG CCGCCTCACC
    GGCTGCTCCT GCCACTACTC CGGCGCCAGC ACACCCACCG CCGGCTACAG
    AGGAAGTGAG CAGCCCGGAT GGGAAGGAGA AGAAGGGTAT ACTGGGCAAG
    ATCATGGAGA AACTGCCCGG TTACCACAAG GGCTCCGGCG AGGAAGACAA
    GACCGCCGCC GCCGCCACCG GCGAGCACAA GAGCAGCGCT TAATTGGGGC
    GTGTGTGAGA CCAGGCCATG GTTGGAATTT GGAAGTGTTT GGCGTGTGTT
    AGTTTGGTGC TTTTTCTGCA CTGCAGCTTT GTTAAGTTCG TGTCAAGATT
    GGTCAAGGCC TGGTCAGCGA AGCCCGATCA GTGATCGAAG TTTGTGTTTC
    GTGTGGGGTA CGGGCTTCAG TTTGCTATAG TCAAGTACTA GATGTTGAGT
    TTGTTTAATT ATTATTGGCA CTCTTGTATT GGTTTTGGGC TGGGCATTCT
    GCCTTGGTAT TAATGATTTC TGCCCAGAAT ATATTGTTGC CT

    Gene models with high sequence identity

    1. AT1G20450.2 [+] show detail - Dehydrin family protein
      E-value: 1e-11; Score: 68.20

     

    InterPro Scan Digest

    Program Description E-value
    PatternScan Dehydrin 0
    PatternScan Dehydrin 0
    PatternScan Dehydrin 0
    HMMPfam Dehydrin 1e-13
    HMMPfam Dehydrin 3.7e-16
    HMMPfam Dehydrin 7.8e-06

    See the detailed result >

    AT1G20450.2

    Model type
    Protein coding
    Short Description
    Dehydrin family protein
    Curator Summary
    Encodes a gene induced by low temperature and dehydration. Inhibits e.coli growth while overexpressed. Belongs to the dehydrin protein family, which contains highly conserved stretches of 7-17 residues that are repetitively scattered in their sequences, the K-, S-, Y- and lysine rich segments. LTI29 and LTI30 double overexpressors confer cold tolerance. Localized to membranes and cytoplasm.
    Computational Description
    EARLY RESPONSIVE TO DEHYDRATION 10 (ERD10); CONTAINS InterPro DOMAIN/s: Dehydrin (InterPro:IPR000167); BEST Arabidopsis thaliana protein match is: cold-regulated 47 (TAIR:AT1G20440.1); Has 6841 Blast hits to 4185 proteins in 438 species: Archae - 12; Bacteria - 333; Metazoa - 1811; Fungi - 290; Plants - 1940; Viruses - 33; Other Eukaryotes - 2422 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR