K04503

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K04503

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K04503

Determination of introduced cDNA(s)

  • J023042N13 - Rice Full-length cDNAs - Original: J023042N13

    full reading [+] show sequence

    Nucleotide sequence: J023042N13 - full reading 
    GATCCGAAAG CAAAAGCGAC TCGTCACAGC TCAAACAAGT CAAGAGCGAA 
    TAGTTCTTGC TGATCTGTTG TTTGATTACT TTAGTTCTCG AGAGGCTTTA 
    GCTGAATCCA TCGATCGATC ATGGAGGATG AGAGGAACAC GGAGAGCCAC 
    CAGGGTGGCG AGGCTGCAGA GCAGGTGGAG GTGAAGGACA GGGGCCTCTT 
    CGACAACCTC CTTGGCAGGA AGAAGGACGA TCAGCCGGAG GAGAAGAAGC 
    ATGAGGAGGA GCTTGTCACC GGCATGGAGA AGGTCTCCGT GGAAGAGCCA 
    AAGAAGGAGG AGCACCACGC CGAGGGCGAG AAGAAGGAGA GCCTCCTCTC 
    CAAGCTGCAC CGATCCAGCT CCAGCTCCAG CTCGTCGAGT GATGAGGAAG 
    AGGAGGTGAT CGATGACAAC GGCGAGGTGG TCAAGAGGAA GAAGAAGAAG 
    GGGCTCAAGG AGAAGATCAA GGAGAAGCTG CCCGGCCACA AGGACCATGC 
    CGGTGAGCAT GCTCCTCCGC CCGCGGCGAC GGGCTTCCCC GCGCCGGCTC 
    CGCCTGCATC CGTGGTGACG GCCGCGCCCA CGCCAGCTCC TGCTCCCGTG 
    GTGACTCACG GCGATCACCA CCACGACACC GCCGTCCCCG TGGAGAAGAT 
    CGAGGGTGAT CACGCCAAGA CGGAGGCGAC CCTGCCACGT GCACCCGAGG 
    AGGAGAAGAA GGGCTTCCTC GACAAGATCA AGGAGAAGCT GCCCGGCGGC 
    CACAAGAAGC CGGAAGACGC AACTGCTGTG CCGCCGCCGG CCGCCTCACC 
    GGCTGCTCCT GCCACTACTC CGGCGCCAGC ACACCCACCG CCGGCTACAG 
    AGGAAGTGAG CAGCCCGGAT GGGAAGGAGA AGAAGGGTAT ACTGGGCAAG 
    ATCATGGAGA AACTGCCCGG TTACCACAAG GGCTCCGGCG AGGAAGACAA 
    GACCGCCGCC GCCGCCACCG GCGAGCACAA GAGCAGCGCT TAATTGGGGC 
    GTGTGTGAGA CCAGGCCATG GTTGGAATTT GGAAGTGTTT GGCGTGTGTT 
    AGTTTGGTGC TTTTTCTGCA CTGCAGCTTT GTTAAGTTCG TGTCAAGATT 
    GGTCAAGGCC TGGTCAGCGA AGCCCGATCA GTGATCGAAG TTTGTGTTTC 
    GTGTGGGGTA CGGGCTTCAG TTTGCTATAG TCAAGTACTA GATGTTGAGT 
    TTGTTTAATT ATTATTGGCA CTCTTGTATT GGTTTTGGGC TGGGCATTCT 
    GCCTTGGTAT TAATGATTTC TGCCCAGAAT ATATTGTTGC CT

    Gene models with high sequence identity

    1. AT1G20450.2 [+] show detail - Dehydrin family protein
      E-value: 1e-11; Score: 68.20

     

    InterPro Scan Digest

    Program Description E-value
    PatternScan Dehydrin 0
    PatternScan Dehydrin 0
    PatternScan Dehydrin 0
    HMMPfam Dehydrin 1e-13
    HMMPfam Dehydrin 3.7e-16
    HMMPfam Dehydrin 7.8e-06

    See the detailed result >

    AT1G20450.2

    Model type
    Protein coding
    Short Description
    Dehydrin family protein
    Curator Summary
    Encodes a gene induced by low temperature and dehydration. Inhibits e.coli growth while overexpressed. Belongs to the dehydrin protein family, which contains highly conserved stretches of 7-17 residues that are repetitively scattered in their sequences, the K-, S-, Y- and lysine rich segments. LTI29 and LTI30 double overexpressors confer cold tolerance. Localized to membranes and cytoplasm.
    Computational Description
    EARLY RESPONSIVE TO DEHYDRATION 10 (ERD10); CONTAINS InterPro DOMAIN/s: Dehydrin (InterPro:IPR000167); BEST Arabidopsis thaliana protein match is: cold-regulated 47 (TAIR:AT1G20440.1); Has 6841 Blast hits to 4185 proteins in 438 species: Archae - 12; Bacteria - 333; Metazoa - 1811; Fungi - 290; Plants - 1940; Viruses - 33; Other Eukaryotes - 2422 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR