K04514

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K04514

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K04514

Determination of introduced cDNA(s)

J033066I11 - Rice Full-length cDNAs - Original: J033066I11

full reading [+] show sequence

GACCTTTCTT CCTCGCGCAA CAGCAGCGGG GCGGGGGCGG GGCGCGGCTT 
GGCGCGACGC CGAGTGGTGC ATCCCGTGAT TTCGCCGACG TCTTCGCCGC 
CCGCGGGGCG GGGGGCAGCA GCAGGAGGAG GAGGAGGAGG AGGGGGGAGG 
CATGGGGAAC GCGAGCGGGC GGGAGGAGGA CCCCGCGGCG GCGGCCGGGG 
AGGGGGACGT CGAGGACTCG TCGGTCCGGT CCTCGGAGCG CGGCTTCCCG 
CCGTACGGCG GAGGGGGCAA CCACGTGCGG CGCGCGTGCT CGGTGGGCGT 
CGTCGGGGGC GGCGGGGGCG CCGGATCGCC GCCCGGGAGC CCCGGCCGCT 
CCCTCTCGCC GCGGATGTTC GTGCCCCAGA CACCTGTGCC TCCACTCCAA 
AGAGCAGCTG ATGTAACTCC AGTGTTCAAC CGGATCTTAA TGAATGAACA 
AGAAGAGGAA TTTGATGGCC CCCCTCAAAA GGAAATTCCT GTCTTGATCG 
TGTGGACGCT TGGAGGAAAA AATGTATCTG TTGAAGGATC CTGGGATAAC 
TGGAAATCAA GGAAACCCAT GCAGAAATCT GGGAAAGATC ATTCGCTCCT 
GTTGATACTT CCATCGGGAG TTTATCGTTA CAGATTTGTT GTAGATGGAG 
AAAGGAAATG TCTTCCTGAT CTTCCTTGTG AAACTGATAT CATGGGCAAC 
GCTGTTAACC TTCTTGATGT TCATGATTTT GTCCCTGAAA GTGTTGAGAG 
TGTGGCAGAA TTTGAGCCTC CCCCATCCCC AGATTCTAGC TACAGTATCC 
AGGCACCCGA GGAAAAGGAT TTCTCAAAAG AGCCACCGGT TCTTCCATCC 
CAACTCCATC TGGGTGTTCT CAACTCACAG AACTCTGATG AAAGTTGTGC 
ACGGCCCCAG CACATAGTCC TCAACCACCT CTTCATCGAG AAAGGCTGGG 
GTGCCCATCC GCTGGTGGCC CTTGGTCTAA CCCACAGGTT TGAGTCCAAA 
TATGTAACCG TCGTCCTGTA TAAGCCCATT GAACGATAGC ATAGTCGCCC 
CCATGAAGTC GAAGTTAGCT TGACAACTCA CTGCGGAACC AACAAGGGCG 
AGGCCTCGCT TCCTGTAAAA GCACTTCAGG TTCAGGAGTA TTTCCGATAA 
CTTGCAGGAA CTTTGGTTGG TGTTGTACAT GATGTACCAT CATGATGTCT 
GGCGCCCTGG TTTGTTTACC TCCGAGGGGC CAAAGCATCA TGAGTTTTTA 
CATATCAGCA TTTCGTTGTT ATCGATGCTC AAGGTATGAA ATGTGTAGAA 
AATACCACTT AGAACCGTGG AAATCCACAG AAATCTTAGG TGCCAGAGTT 
AGATCTTGTG ATCCATAGAT TCTTAATTAT TTTGAACGAT GCTGTTGTTT 
GTTCTTAATG TAATAAAAAC AGAGGTGCTC ATTTTACTAC T

Gene models with high sequence identity

AT5G21170.1 [+] show detail - 5'-AMP-activated protein kinase beta-2 subunit protein
E-value: 2e-75; Score: 280.00

InterPro Scan Digest

Program	Description	E-value
HMMPanther	SNF1-KINASE BETA SUBUNIT, PLANTS	3.9e-119
HMMPanther	5'-AMP-ACTIVATED PROTEIN KINASE , BETA SUBUNI	3.9e-119
HMMPfam	5-AMP-activated protein kinase, beta subunit, interaction domain	5.2e-19

See the detailed result >

AT5G21170.1

Model type: Protein coding
Short Description: 5'-AMP-activated protein kinase beta-2 subunit protein
Curator Summary: Encodes AKINbeta1, a subunit of the SnRK1 kinase (Sucrose non-fermenting-1-related protein kinase). Involved in regulation of nitrogen and sugar metabolism.
Computational Description: AKINBETA1; FUNCTIONS IN: AMP-activated protein kinase activity; INVOLVED IN: N-terminal protein myristoylation, cellular response to nitrogen levels; LOCATED IN: chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: 5-AMP-activated protein kinase, beta subunit, interaction domain (InterPro:IPR006828); BEST Arabidopsis thaliana protein match is: 5'-AMP-activated protein kinase beta-2 subunit protein (TAIR:AT4G16360.3); Has 697 Blast hits to 689 proteins in 198 species: Archae - 0; Bacteria - 3; Metazoa - 248; Fungi - 167; Plants - 204; Viruses - 0; Other Eukaryotes - 75 (source: NCBI BLink).
Link: InterPro Scan - TAIR