K04526

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K04526

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K04526

Determination of introduced cDNA(s)

  • J013000F03 - Rice Full-length cDNAs - Original: J013000F03

    full reading [+] show sequence

    Nucleotide sequence: J013000F03 - full reading
    GAGTGCAGTA GTAGTAGCAT GCAAAGGATT TGCCCTGCTC ACTGCTCGGT 
    CACTCACTCA CTCACCATGA AGTCCATGAG GCTTTCCTAC ATCCCTCCTG
    CTGCTTCTGC TGCTCCACAG AGCCCCAGCT ATGGCAGGAA GAAGAACGCC
    TCCGCCGCTC CGCCATCGGC TGCCGCCTCC ACCACCGTTC TCACCTCCCC
    GCTGGTGACC ACCACCCGCA CTCCGAAGCA GACCGAGCAA GAGGACGAGC
    AGTTGGTAGC CAAGACCAAG ACTACGAGAA CTGTTATTGC TACGACGAAT
    GGCAGGGCGG CGCCGAGCCA GTCTCGGCCT CGCCGCCGGC CTGCCCCCGC
    CGCCGCGGCG TCGGCCGCTT CGCTGCCGAT GACGTTCTGC AACGCGCTGG
    AGGAGGTGAT CAACACGTTC ATCGACCCGC CGGCGCTTCG GCCGGCGGTG
    GACCCGCGGA ACGTGCTGAC CAGCAACTTC GTGCCCGTGG ACGAGCTGCC
    GCCGACGCCC TGCCCCGTCG TGCGCGGCGC CATCCCGCGC TGCCTCGCCG
    GCGGCGCCTA CATCCGCAAC GGGCCCAACC CGCAGCACCT CCCGCGCGGG
    CCGCACCACC TGTTCGACGG CGACGGCATG CTGCACTCCC TCCTCCTCCC
    GTCGCCCGCG TCGTCCGGCG ACGACCCCGT CCTGTGCTCG CGCTACGTGC
    AGACGTACAA GTACCTCGTG GAGCGCGACG CCGGCGCGCC CGTCCTGCCC
    AACGTCTTCT CCGGCTTCCA CGGCGTGGCC GGGATGGCGC GCGGCGCCGT
    CGTGGCGGCC AGGGTCCTGA CCGGGCAGAT GAATCCGTTG GAGGGCGTCG
    GGCTCGCCAA CACCAGCCTC GCCTACTTCG CCGGCCGCCT CTACGCGCTC
    GGCGAGTCCG ACCTCCCCTA CGCCGTGCGC GTCCACCCGG ACACCGGCGA
    GGTGACCACG CACGGCAGGT GCGACTTCGG CGGCCGCCTC GTCATGGGCA
    TGACCGCGCA CCCCAAGAAG GACCCCGTCA CCGGCGAGCT CTTCGCGTTC
    CGCTACGGCC CCGTGCCGCC GTTCGTGACG TACTTCCGGT TCGACCCGGC
    CGGCAACAAG GGCGCCGACG TGCCCATCTT CTCCGTGCAG CAGCCGTCGT
    TCCTGCACGA CTTCGCCATC ACCGAGCGGT ACGCCATCTT CCCGGAGATC
    CAGATCGTGA TGAAGCCCAT GGACATGGTG GTGGGCGGCG GCTCGCCCGT
    GGGGTCGGAC CCCGACAAGG TGCCCCGCCT CGGCGTGATC CCGCGCTACG
    CCACCGACGA GTCGGAGATG CGGTGGTTCG AGGTGCCGGG CTTCAACATC
    ATGCACTCGG TGAACGCGTG GGAGGAGGCC GGCGGCGAGG AGCTGGTGCT
    GGTGGCGCCC GAAGTCCTCT CCATCGAGCA CGCCCTGGAG CACATGGAGC
    TAGTGCACTC CTGCGTCGAG AAGGTGCGCA TCAACCTCCG CACCGGCGTC
    GTCACGCGCA CCCCGCTCGC CGCCGGGAAC TTCGACTTCC CCGTGATCAA
    CCCGGCTTTC CTCGGCCGCC GCAACAGGTA CGGCTACTTC GGCGTCGGCG
    ACCCCGCGCC CAAGATCGGC GGCGTGGCCA AGCTCGACTT CGACCGCGCC
    GGCGAGGGCG ACTGCACCGT GGCGCAGCGC GACTTCGGGC CCGGGTGCTT
    CGCCGGCGAA CCGTTCTTCG TGGCCGACGA CGTCGAGGGC AACGGCAACG
    AGGATGACGG GTACTTGGTG TGCTACGTCC ACGACGAGGC CACCGGCGAG
    AACCGGTTCG TGGTGATGGA CGCGCGGTCG CCGGACCTGG AGATCGTCGC
    GGAGGTGCAG CTGCCCGGAC GCGTCCCCTA CGGCTTCCAT GGCCTGTTCG
    TCACGCAGGC CGAGCTCCAG TCACAGCACC AATGATACAA ACCAACGTAG
    CAATGTATAG AATTCACGTA TACATTTTCC ATACGAAATT ACGAGTTACT
    GTGGAACACG TAGTATAAGT GCACACATAC TTCGAGAAAA TTATGTAGAG
    TACATATGAA ATGAAAGAAT GATTTTAACC

    Gene models with high sequence identity

    1. AT4G19170.1 [+] show detail - nine-cis-epoxycarotenoid dioxygenase 4
      E-value: 1e-174; Score: 610.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Carotenoid oxygenase 5.8e-122
    HMMPanther 9-CIS-EPOXYCAROTENOID DIOXYGENASE 7.6e-154
    HMMPanther Carotenoid oxygenase 7.6e-154

    See the detailed result >

    AT4G19170.1

    Model type
    Protein coding
    Short Description
    nine-cis-epoxycarotenoid dioxygenase 4
    Curator Summary
    chloroplast-targeted member of a family of enzymes similar to nine-cis-epoxycarotenoid dioxygenase
    Computational Description
    nine-cis-epoxycarotenoid dioxygenase 4 (NCED4); LOCATED IN: chloroplast, plastoglobule; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Carotenoid oxygenase (InterPro:IPR004294); BEST Arabidopsis thaliana protein match is: nine-cis-epoxycarotenoid dioxygenase 5 (TAIR:AT1G30100.1); Has 2918 Blast hits to 2864 proteins in 491 species: Archae - 16; Bacteria - 796; Metazoa - 323; Fungi - 173; Plants - 887; Viruses - 0; Other Eukaryotes - 723 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR