K04617

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K04617

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K04617

Determination of introduced cDNA(s)

  • J023056A05 - Rice Full-length cDNAs - Original: J023056A05

    full reading [+] show sequence

    Nucleotide sequence: J023056A05 - full reading 
    TGGGGCCTTG GCGTAAAAGA AAGAGAAATC TCCATTCTCG TCGTCTCCTC 
    AGCTGCTTGC GCCAAGACGA GTCGCGGCTC AACAGGGGGA GGGGCGGCGA 
    TCTCCATCCA TCCGGCGAGC AGAGCAGGGG AGGGGAGGGG ATCCTGGAAA 
    ATGCTAAACC TTATTAAGAT AAAGGGTCAA AAGAAGGAAG ATGCAGCCAA 
    TGCAAATGGA AAGCCTCCTG CCAAAAAGCA AAGTCCAGGG GAGTTGCGTC 
    TTCACAAAGA TATTGCTGAA CTTAAACTTC CTAAGTCGAC TAGAATTTCT 
    TTTCCTAATG GCAAGGATGA TTTGATGAAC TTTGAAGTTA CTATTCGACC 
    TGATGAGGGA TACTATGTAG GTGGTAAATT TATTTTTACT TTCCAAGTTC 
    CTCCTGCCTA TCCTCATGAA CCACCCAAAG TCAAGTGCAA GACTAAGGTC 
    TATCATCCCA ATATTGACTT GGAGGGAAAT GTCTGCCTTA ACATTCTGCG 
    TGAAGATTGG AAGCCTGTCC TGAATGTCAA CACGATTGTA TATGGCTTGA 
    ATCTTCTTTT CTCACAACCT AATGATGAGG ACCCTCTAAA TCATGAGGCG 
    GCAGCAGTTC TTCGAGACAA CCCAGAAAAG TTTGAGAGAA ATGTCCAGAG 
    GGCAATGGCT GGAGGCTATG TTGGTGAAAC CCACTTCCCT AGATGTATGT 
    AAGGCCTGAA GATGGTGATC GGTACCTGAC TTATCTGCTG CTGCCATTTC 
    TCCTACCAAT GCACTATGGT AAAAGCAGTA TATGTAACCA AGAAGGAACT 
    TCTCTGTTAT GTAACAACAG CAGTTGCTAG AAAGTAAGTT AGTGAGGCAA 
    TTGAACTCAC GTTCATAACC CGCAATCCGA AGACTCTGGG TTAACCTGTT 
    GTGGCAAATG TTCTCTTTTG GCCCTCGCGC GCATCTCAGT CATTCTGATT 
    CATACCAGTT TCTGAGATGC TTTTGTATAA TGCCAGCTAG AGAAAATGCT 
    GAACAGTATG TGTGTGCTGC ACTTACTGCC TGTTATGACT TATGGCTACC 
    AGGAAGTAAG AACAAGTTCA CTAACATTGC TTAATGTAAC ATGCTACCTT 
    GGGTAGTTGT GTTGTTCTTT TTTCCAAGCT CTGTAACTGG AAAAGTCTTC 
    TCCACCTAAA TGTTCTGAAA GGCATTTCAT GGCTATTTTA ACTGC

    Gene models with high sequence identity

    1. AT4G36800.2 [+] show detail - RUB1 conjugating enzyme 1
      E-value: 3e-74; Score: 275.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther RUB1 conjugating enzyme Ubc12 2.2e-101
    HMMPanther UBIQUITIN-CONJUGATING ENZYME E2 2.2e-101
    HMMSmart Ubiquitin-conjugating enzyme, E2 1.2e-38
    superfamily Ubiquitin-conjugating enzyme/RWD-like 5.2e-46
    Gene3D Ubiquitin-conjugating enzyme/RWD-like 6.1e-41
    PatternScan Ubiquitin-conjugating enzyme, E2 0
    ProfileScan Ubiquitin-conjugating enzyme, E2 30.267
    HMMPfam Ubiquitin-conjugating enzyme, E2 3.3e-38

    See the detailed result >

    AT4G36800.2

    Model type
    Protein coding
    Short Description
    RUB1 conjugating enzyme 1
    Curator Summary
    RUB1 conjugating enzyme that conjugates CUL1 and is involved in auxin response and embryogenesis. RCE1 protein physically interacts with RBX1, which may be the E3 for CUL1.
    Computational Description
    RUB1 conjugating enzyme 1 (RCE1); CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Ubiquitin-conjugating enzyme, E2 (InterPro:IPR000608), RUB1 conjugating enzyme Ubc12 (InterPro:IPR015580); BEST Arabidopsis thaliana protein match is: Ubiquitin-conjugating enzyme family protein (TAIR:AT2G18600.1); Has 8473 Blast hits to 8470 proteins in 386 species: Archae - 0; Bacteria - 0; Metazoa - 3871; Fungi - 1731; Plants - 1533; Viruses - 20; Other Eukaryotes - 1318 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR