K04640

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K04640

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K04640

Determination of introduced cDNA(s)

  • J023012H05 - Rice Full-length cDNAs - Original: J023012H05

    full reading [+] show sequence

    Nucleotide sequence: J023012H05 - full reading 
    GAACGTGTGG TTTAACAATC ACTGTGGACT CCGAAAGCCT CCTGGCGACG 
    ATGGCGTCGT CGTCACGGCC GGAGGAGGCG GCGGCGGCGG CGCCGCCGTG 
    GAGCAGGCTG GAGGGGCGGG TGGTGCTGGT GACGGGCGCC TCCTCGGGGC 
    TCGGCCGCGA GTTCTGCCTC GACCTGGCGC GCGCCGGCTG CCTGGTCGTC 
    GCCGCCGCGC GCCGCGCCGA CCGCCTCCGC TCGCTCTGCG ACGAGATCAA 
    CGCCTCCGCC CCCCGGGCTT CGGCGGCGGC GGCCGCCGTC GAGCTCGACG 
    TCGCCTCCGG TGGGCCCGCC TTGGAGGCCG CCGTGCAGAG CGCCTGGGAC 
    GCCTTCGGCC GCATCGACGT CCTCATCAAC AACGCTGGCC TTCGAGGAGG 
    TGTGCACTCA CCATTGGATT GGCCTGAGGA TGAATGGGAG ACACTTATCA 
    AGACAAACCT CACAGGATCA TGGCTCGTCG CCAAGCATGT ATGTAGACGC 
    ATGCGTGATG CCAAGCTAAA GGGTTCAGTA ATTAACATTT CCTCTGTTTC 
    TGGTCTTAAC CGTGGTCATC TGCCTGGCTC CACTGGATAC GCAGCTTCCA 
    AGTCTGCCAT GCATTATGCC ACAAAGCTAA TGGCTTTGGA ATTAGGAGCA 
    TATGGCATTA GAGTGAACTC AATAGCACCT GGAATCTTCA AGTCAGAGAT 
    AACCGCTCCT CTATTGCAAA AGAAATGGTT GAGCACTGTT GTTTCAAAGA 
    TAGTGCCACT TAAGACTCAT GGCACTACTG ATCCAGCATT GACGTCGCTG 
    GTTCGTTTTC TGATCCATGA AACATCATCA TATGTGACTG GCAACATCTT 
    CATTGTAGAT TCTGGTGCCA CCTTACCTGG TGTTCCAATA TTCTCTTCTC 
    TGTAATATTC ATCATTAGAA TTTGCTTTCA AAAAGTCATC GGATCTATTG 
    ATTTGGCATC AAATAAAAAT CGAAACTCCA GGGAGGTGGA ATTTCTAT

    Gene models with high sequence identity

    1. AT3G55290.2 [+] show detail - NAD(P)-binding Rossmann-fold superfamily protein
      E-value: 2e-84; Score: 309.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Short-chain dehydrogenase/reductase SDR 2.6e-26
    HMMSmart Polyketide synthase/Fatty acid synthase, KR 0.00092
    HMMPanther BETA-KETOACYL-ACP REDUCTASE-RELATED 3.7e-129
    HMMPanther Short-chain dehydrogenase/reductase SDR 3.7e-129
    superfamily NAD(P)-binding domain 7.5e-66
    FPrintScan Glucose/ribitol dehydrogenase 4.4e-30
    FPrintScan Glucose/ribitol dehydrogenase 4.4e-30
    FPrintScan Glucose/ribitol dehydrogenase 4.4e-30
    FPrintScan Glucose/ribitol dehydrogenase 4.4e-30
    FPrintScan Glucose/ribitol dehydrogenase 4.4e-30
    FPrintScan Short-chain dehydrogenase/reductase SDR 9.3e-12
    FPrintScan Short-chain dehydrogenase/reductase SDR 9.3e-12
    FPrintScan Short-chain dehydrogenase/reductase SDR 9.3e-12
    Gene3D NAD(P)-binding domain 1.5e-58

    See the detailed result >

    AT3G55290.2

    Model type
    Protein coding
    Short Description
    NAD(P)-binding Rossmann-fold superfamily protein
    Computational Description
    NAD(P)-binding Rossmann-fold superfamily protein; FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity; INVOLVED IN: oxidation reduction, metabolic process; LOCATED IN: peroxisome; EXPRESSED IN: leaf; CONTAINS InterPro DOMAIN/s: Short-chain dehydrogenase/reductase, conserved site (InterPro:IPR020904), NAD(P)-binding domain (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT3G55310.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR