K04651

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K04651

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
rosette leaf (PO:0000014)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
stem (PO:0009047)
  • decreased thickness (PATO:0000592)
    (Stem::Shape::thin)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Original: K04651

Determination of introduced cDNA(s)

  • J033046F10 - Rice Full-length cDNAs - Original: J033046F10

    full reading [+] show sequence

    Nucleotide sequence: J033046F10 - full reading 
    GATCCAGAAT CAGATCCACA AGGCAGCAGC TGCAGCAGCA TCGACCATGG 
    CGATGGCGCG ATCCATCCTC CTCCTCCTCC TCCTCGCCGC CGCCGCCTCC 
    GCCTCCGCCG ACGCGCCCTT CCTCGTCGCG CACAAGAAGG TTTCGCTCTC 
    CCGCCCCAAG CCTGGCGTCG AGCGCCTCGC CGTCTCCCTC GACCTCTACA 
    ACCAGGGATC CGCAACTGCC TATGATGTGA GCATTAATGA TGATACTTGG 
    CCAAAGGAGG CATTTGAGCT TGTCTCTGGA GAGATGTCAA AGACATTGGA 
    AAGGCTTGAC CCTGGTGTCA CTGCTTCGCA TGCATTTGTC TTGGAGACCA 
    AAGTACAGGG CATGTTTCAG GTTCACCTGC GGTTATTACC TATCGTGTTC 
    CCACAAAGGC TGCGCTTCAG GAGGCCTATT CAACCCCCAT CCTTGCACTT 
    GATGTTCTTG CTGAGAGGCC TCCAGAAAAG AAGTTTGAAT GGGCTAAGAG 
    GCTTGTGGCG AAGTACGGGT CGCTGGTGTC CGTTGTTGGC TTGGTTGGAG 
    TGTTTATCTA CCTGGTTGCA AGCCCGTCAA AATCCAGCGG TGCAAAAGCA 
    AGCAAGAAGA GGCGTTGATA TACTTGCCTA CCATATATAA GGCAGTGTTT 
    GTTCTTTTTT ATTAAAAAGA GGAAGAGATG GTGGCAGGTT TTTTAGATTG 
    ATAGCGCGAG AGCTTTAAGG CTGCCGCATC CTTGAACTGT ATGAATTTTC 
    TCTGTTTGTG TTTTTGGAAG TTGAAAACCT AACCCAGAGA ATTGGAGAGT 
    AGATTTTGTA ACAGATGAAA TCTCAATGCA TCATTTTGAA GTTGCCTGAT 
    ACAGATACCT ATTCATTGCA TTTGGTAACA GATGAAATCC C

    Gene models with high sequence identity

    1. AT5G14030.4 [+] show detail - translocon-associated protein beta (TRAPB) family protein
      E-value: 2e-20; Score: 96.70

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Translocon-associated beta 0.0000000000000019
    HMMPfam Translocon-associated beta 1.5e-34
    HMMPanther Translocon-associated beta 1.5e-21

    See the detailed result >

    AT5G14030.4

    Model type
    Protein coding
    Short Description
    translocon-associated protein beta (TRAPB) family protein
    Computational Description
    translocon-associated protein beta (TRAPB) family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Translocon-associated beta (InterPro:IPR008856); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR

  • J013069E13 - Rice Full-length cDNAs - Original: J013069E13

    full reading [+] show sequence

    Nucleotide sequence: J013069E13 - full reading 
    GGCCGCTCAT TCCATCCCCA CCACTCCTAA TGCTGCTCGC GATGCCGCCG 
    CTGCTGCTGC CGCCGCTCGT CGCCGCACCA CCGCATCGAT GCTGCTACTG 
    CTGCTGCTGT CGTCGCCGCG CCGCATCTGC TGCTGCTGCC GCCAACGCGC 
    CGCTGAGAAG GAAGAGAGGA GGAAGGAGAA AGGGGAAGAA AGAAGAAGGG 
    AAAAGGGGCA GTTTGGTCTA TTTTTTTTCT GGAAATGCAT CCAAGAGGTA 
    AGTAGTGGTA TCTTTTGAAT ATGTGTGAAA TTACAATGGC ATATTTTCAA 
    ATACATGAAT ACTAGTGGTA TATTTTAAAA CCAGCAAATT TTTAATGGCA 
    TGTATCCAAT TAACCCTTGT TTGAATCGGG TCAAGGTGTC AAAGTGACTT 
    GGCTAGCAAG GGCCAAGTCG TTCCAAAGGA ATTGGAGAAA AAAAAAGATC 
    AACAATGTAT GCACACTTCA ACCCATAGAA AATTTTCAAG AGGTTTGAGT 
    GGATGAAAAC CTTCCTATAG TTTTTCTGTA CAACTTGTAG GAAAGGAATT 
    TTTCTTTTGG TTTTTCTATG TCAACATTTT TATGAACCGA ACAGCATTTA 
    TAGGAATTAA TCTTTAGAAA TTTAAATTTT TTAAAATTCC TCCAAAACGA 
    ATATGTGGAA AATAAAACAA AATGTATTAG ATACATCATA TGCAATTTAT 
    GCATGTTAGC CAGGTTTATC AAATGGTTTT TGCTAGATTT ATTGCGCAGG 
    CAAGAGGATT CAAGCGCACG ACCTTGAGAT TTTTCAGTGC AAAGCTGCTA 
    GCAAATCGGA TACCCGCCAT TATTTGTTAG TTACATACAA GTTATTGCTG 
    ACAGACTATG CCCGCCTATG GTATTCAAAG AGAATGGTGA TCGTTGGTGT 
    TAGGGTATAC GTGAGATTGA GGTAAAAAAG ACATTAGACA TGGATTTTTA 
    TATAGGTTCG GACCCACTAC TTGATGGGTA ATAGCCCTGT TCCTGTTGGG 
    CAAAGCCAAT GTTGCCTTTG TATATTAATA TCTCACGAGT ACAGAATATG 
    GGATGACCTA ATCTAATCCC TATCGGCCTA GCGGCATGGA GCTCTCACAT 
    GTGGTTGATG GCTAGTGTAG TCTTCTTCCT CTAATATGAA CTCGGCGAGA 
    TTGAAGGTAG CTCTAAATCC CTCATGTCGG TTTTTGTGGC TTCTACATTG 
    GATTTATGTA GATATGCCTT CATTTCGTCC CTCTCTTTCT AGGGGGCCTT 
    GTATTTATAC CTTCAGATAT CCCCTTGTTT AAGTAGAACT AAGGAATCAA 
    CTATCGTATA GATTAGGGGT GAAAACGGCA CAGAAATATC CGAGAATTCC 
    GGCTACCGTT TCCGGTTTGC ACCGACTGTT TCAGTCGGTA TCAGTAATTG 
    TCGGTATCGG AAATGAAAAC AGTAATCTCT TCCGAAAATG GTAGTAGAAA 
    TGATATGGGC TTTTTTCCGA CCGTTTTGTC GGTAACCATT TTTATCGGTA 
    ATTTCCGTCA AATTTTCGAC AAACTTCTAA AGAAGGAAGC CGGCTGGGCC 
    TGTATAGCTG GAGCAGGAGC AGCCCATTAG GCATTTAGGC TGGGAAGAAA 
    AACCCTAGGG CGTCAGCCGG CGTGTCACTT ATCCTTCTCA TACTCTCCCT 
    GTCTCGCGAC TCTCGCTGTC TCACACTGTC GCACAGCTCT GTGCCGCCTC 
    TACCTCCGGT GACCGCCACC GCCGCAACCA CGTGTCCACG CCGCCACACC 
    GCCGCTTGCT AGTCCTAGCC GTCGCATCCT CGCGCCTCGC CGCGTCCCTT 
    GCCGGAGAAG CAAGATGGCA CCTGCCGGAG GAAAACGCCG CACCCTTCTG 
    GATCCATCCG ACGGCAACAA CAGAGACAGA GGAACATTGA GTTCGCCACC 
    GTTGTGTTTG CTAGGTCCAC CACCACCACC ACCAGGTATA GCCGTATAGG 
    CGTATAGCTT GAATGCTTGA GCATGATTTT TTTACATGTA TAGATGAATG 
    CCTGAGCCTT GATGTTTTTT AGCATGATTT TCTGTTGATG TGTGCAAGCA 
    CGATTTCTGT AGATGTACAG CTTAATCCTT GAGCATGTTT TTTTTAGATG 
    TATAGCTTGA GCCTTGTGTT AATCGTTAAT CACTTCCTCA TTTTTTTAAA 
    ATCTCAATCT GCTGCATCTG GAAGTGCCAG TGGAAGTCAT CATGTGGGTG 
    TGACTGCATC ATCATCTACA CCTGAATCAG CGGTACCTCC AACCATTGCC 
    ACAGGTACCT CACAAACAAT TGAGATTGAT GCTGATGTTA ATAGGGTTGA 
    TGACAATGAT GAGCGTCCTG TGAAAAGGAA AAAATTGACA TCAGAAGTCT 
    GGCAGTACTT CAACAAGGAA AAAGTGAGTA TAGATGAGAA TGGTAAGATC 
    TATAAACAGG AGTGGGCACA TTGCAAATTC AAGAATTGCA CTTACAAAGG 
    TAGATGTGAG AGTGCCACTG GAACAAGCGG ATTTTGGAGC CATCTGAAAT 
    TACATCACAG TGTTGTCAAA GGGCAGCAAC AACTCAAAGC TCAGAAGGAC 
    CAAGAGAAGG GCATCAACGT TGTTGAACCT TACAAGTATG ATGAGGAAGC 
    TAGCTTGAGG AAGTTATATG TGGCAATAAT CATGCATGAG TACCCTTTCA 
    ATATGGTTGG GCATGAATAT TTTCGTGATT TCATTACATC GTTGCGCCCT 
    AACTTTCCAT TGAAATCCCG TGTAACAGTT AGAAAAGAAA TATTGAGCAT 
    CTATATGCAG GAAAGGGATA AGTTGTATGA ATATCTCAAA ACTGTGAAAT 
    GCCGCATTAG TGCGACCATG GATATGTGGA CATCCAATCA AAACAAAGGA 
    TATATGTGCA TC

    Gene models with high sequence identity

    1. AT3G42170.1 [+] show detail - BED zinc finger ;hAT family dimerisation domain
      E-value: 0.000000000003; Score: 71.60

     

    InterPro Scan Digest

    See the detailed result >

    AT3G42170.1

    Model type
    Protein coding
    Short Description
    BED zinc finger ;hAT family dimerisation domain
    Curator Summary
    transposase-like gene with conserved domains from the family of hAT transposases that includes hobo from Drosophila melanogaster, Activator (Ac) from maize, and Tam3 from snapdragon but lacks several amino acids known to be essential for Ac transposition5. The DAYSLEEPER gene lacks 8 bp duplications and TIRs (a common feature of transcriptionally silent hAT transposases), however, DAYSLEEPER expression was detected, and several expressed sequence tags are available. The expression seems to be under the control of factors determining the circadian rhythm. DAYSLEEPER was isolated as a factor binding to a motif (Kubox1) present in the upstream region of the Arabidopsis DNA repair gene Ku70. Mutant plants lacking DAYSLEEPER or strongly overexpressing this gene do not develop in a normal manner.
    Computational Description
    BED zinc finger ;hAT family dimerisation domain; CONTAINS InterPro DOMAIN/s: HAT dimerisation (InterPro:IPR008906), Zinc finger, BED-type predicted (InterPro:IPR003656); BEST Arabidopsis thaliana protein match is: BED zinc finger ;hAT family dimerisation domain (TAIR:AT1G18560.1); Has 1233 Blast hits to 1128 proteins in 97 species: Archae - 0; Bacteria - 4; Metazoa - 232; Fungi - 219; Plants - 755; Viruses - 0; Other Eukaryotes - 23 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR